View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4062_low_5 (Length: 437)
Name: NF4062_low_5
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 44227272 - 44227429
Alignment:
| Q |
25 |
agctccaagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttg |
124 |
Q |
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| T |
44227272 |
agctccaagtaataagctttagtttagtttcttgctcaataagctacagcagaaccatagtatgttatggtgttcttgcaattagctatatatagctttg |
44227371 |
T |
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| Q |
125 |
taatcagttgagcacttaagcaaaatcatttca-tttttcagtttcataatatggtat |
181 |
Q |
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| T |
44227372 |
taattacttgaactcttaaagaaaatcatttcattttttcagtttcataatatggtat |
44227429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 44231571 - 44231722
Alignment:
| Q |
25 |
agctccaagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttg |
124 |
Q |
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|||||||||||||| ||| ||| |||||||||||| ||||| ||||||||| | ||||||||||||||||| | |||||| ||||||| ||||||||| |
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| T |
44231571 |
agctccaagtaataagctgtagcttagtttcttgctcaataagctacagcagaaccatagtatgttatggtattcttgcaatgagctatatatagctttg |
44231670 |
T |
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| Q |
125 |
taatcagttgagcacttaagcaaaatcatttca-tttttcagtttcataata |
175 |
Q |
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| T |
44231671 |
taattacttgaactcttaaggaaaatcatttcattttttcagtttcataata |
44231722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 15885130 - 15885030
Alignment:
| Q |
26 |
gctccaagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagctttgt |
125 |
Q |
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| T |
15885130 |
gctccaagtaagagtgtgtagtttagttgtttgcacaataagctactgcagtaccatagtatgttatggtactcatg-atttagctatatatagccttgt |
15885032 |
T |
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| Q |
126 |
aa |
127 |
Q |
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|| |
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| T |
15885031 |
aa |
15885030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 31356707 - 31356803
Alignment:
| Q |
25 |
agctccaagtaataggctttagtttagtttcttgcataataaactacagcagtatcatagtatgttatggtacacatgcaattagctataaatagct |
121 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| ||||||||| | |||||||||||||||| | |||||||||||||| |||||| |
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| T |
31356707 |
agctccaagtaataagctttagtttagtttcttgctcaataagctacagcagcaccatagtatgttatggtgttcttgcaattagctatatatagct |
31356803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 31368397 - 31368457
Alignment:
| Q |
115 |
aatagctttgtaatcagttgagcacttaagcaaaatcatttcatttttcagtttcataata |
175 |
Q |
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| T |
31368397 |
aatagctttgtaattacttgaactcttaaggaaaatcatttcatttttcagtttcataata |
31368457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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