View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4062_low_6 (Length: 289)
Name: NF4062_low_6
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 54904433 - 54904170
Alignment:
| Q |
17 |
ctaagcagcacactgccagcatatgcatccaatgacatgttttgtcggctgaacgcaccatccagtttgaacttggaaggaatgagttcttctgcactag |
116 |
Q |
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| T |
54904433 |
ctaagcagcatactgccagcatatgcatccaatgacatgttttgtcggctgaacgcaccgtccagtttgaacttggaaggaatgagttcttctgcactag |
54904334 |
T |
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| Q |
117 |
tccctccacttcagtctcataacattcccaattttgagacaccaatgttttctgaaagtgaaagttcgagttccgtacatggcattcaaacgtcaatgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54904333 |
tccctccacttcagtctcataacattcccaatttcgagacaccaatgttttctgaaagtgaaagttcgagttctgtacatggcattcaaacgtcaatgga |
54904234 |
T |
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| Q |
217 |
catcaaccagtttcagcagaatatttatctgcctgataacattaatttaagtccaattgatgat |
280 |
Q |
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| T |
54904233 |
catcaaccagtttcagcagaatatttatctgcctgataacattaatttaagtccaattgatgat |
54904170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 54888310 - 54888048
Alignment:
| Q |
18 |
taagcagcacactgccagcatatgcatccaatgacatgttttgtcggctgaacgcaccatccagtttgaacttggaaggaatgagttcttctgcactagt |
117 |
Q |
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| T |
54888310 |
taagcagcacattgccaacatatgcatctagtaacatgttttgtcggttgaacgcaccatctggcttgaacttgagaggaatgagttcttctgcactagt |
54888211 |
T |
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| Q |
118 |
ccctccacttcagtctcataacattcccaattttgagacaccaatgttttctgaaagtgaaagttcgagttccgtacatggcattcaaacgtcaatggac |
217 |
Q |
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| T |
54888210 |
ccctccacttcagtctcaaaacattcccagttacaagcagccattgttttttgcaagtgaaagctcgagtgctttaaagggtgttcgaacgtcagtggaa |
54888111 |
T |
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| Q |
218 |
atcaaccagtttcagcagaatatttatctgcctgataacattaatttaagtccaattgatgat |
280 |
Q |
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|| ||||| ||||||||||| ||||| | |||| |||||| || |||||||||||||||||| |
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| T |
54888110 |
attaaccaatttcagcagaacatttacccacctggtaacatgaaattaagtccaattgatgat |
54888048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 54893934 - 54893772
Alignment:
| Q |
18 |
taagcagcacactgccagcatatgcatccaatgacatgttttgtcggctgaacgcaccatccagtttgaacttggaaggaatgagttcttctgcactagt |
117 |
Q |
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|||| |||||||||||| |||||||||| | || ||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||| ||| |
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| T |
54893934 |
taagtagcacactgccaacatatgcatctagtggcatgttttgtcggctgaacgcaccatctagtttgaactttagacgaatgagtccttctgcaccagt |
54893835 |
T |
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| Q |
118 |
ccctccacttcagtctcataacattcccaattttgagacaccaatgttttctgaaagtgaaag |
180 |
Q |
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||| |||||||||||||| ||||||| || ||| || || |||||||||| ||||||||| |
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| T |
54893834 |
cccaccacttcagtctcaaaacattctcagtttcaagcagccgatgttttctgcaagtgaaag |
54893772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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