View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4062_low_7 (Length: 265)
Name: NF4062_low_7
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 53491245 - 53490997
Alignment:
| Q |
1 |
atcacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgct |
100 |
Q |
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| T |
53491245 |
atcacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgct |
53491146 |
T |
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| Q |
101 |
caatatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491145 |
caatatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaat |
53491046 |
T |
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| Q |
201 |
caaagaaagatgatcttagctccttggtgtgatgagaaggtagaaattg |
249 |
Q |
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| T |
53491045 |
caaagaaagatgatcttagctccttggtgtgatgagaaggtagaaattg |
53490997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 53498841 - 53498593
Alignment:
| Q |
1 |
atcacttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgct |
100 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
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| T |
53498841 |
atcacttcaattttgcacaggtttgtgttgttcgacgtgataatggagcaaagattcacattgctaatgctgatttggttgaagaaattagaaagttcct |
53498742 |
T |
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| Q |
101 |
caatatcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaat |
200 |
Q |
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| T |
53498741 |
caataatattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaat |
53498642 |
T |
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| Q |
201 |
caaagaaagatgatcttagctccttggtgtgatgagaaggtagaaattg |
249 |
Q |
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| T |
53498641 |
caaagaaagatgatcttagctccttggtgtgatgagaaggtagaaattg |
53498593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 16069920 - 16069678
Alignment:
| Q |
6 |
ttcaatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgctcaata |
105 |
Q |
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||||||||| || ||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
16069920 |
ttcaattttgcataggtttgtgttgttcgacgtgataatggtgcaaagattgacattgctaatgctgatttagttgaagaaataaaaaagttgctcaata |
16069821 |
T |
|
| Q |
106 |
tcattcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaatcaaag |
205 |
Q |
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| T |
16069820 |
atgttcaacaaaatatgttggatgttgcaaaacagaaacgagatgaatgtattcaagtcatacatacatgggatgagtttgtagaagctttgaatcaaag |
16069721 |
T |
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| Q |
206 |
aaagatgatcttagctccttggtgtgatgagaaggtagaaatt |
248 |
Q |
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| T |
16069720 |
gaagatgatcttaggtccttggtgtgacgagaaggtagaaatt |
16069678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 45355538 - 45355771
Alignment:
| Q |
9 |
aatttttcacaggtttgtgttgttctacgtgataatggagcaaagatggacattgctaatgctgatttggttgaagaaattaaaaagttgctcaatatca |
108 |
Q |
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|||||| ||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||| ||||||||||| ||||| || ||||||||| ||| | |
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| T |
45355538 |
aattttgcacaggtccgtgctgttcgtcgtgatagcggagcaaagatcgacattggtaatgatgatttggttgtggaaataaagaagttgctcgataata |
45355637 |
T |
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| Q |
109 |
ttcaacaaaatatgttcgatgttgcaaaacaaaaacgagatgaatgtattcaagtcatacatacgtgggaggagttcaaagaagctttgaatcaaagaaa |
208 |
Q |
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||||||| ||| |||| ||||| |||||||| |||||||||| ||||||||| |||||||||| ||||| ||||| || |||||||||| ||| ||| |
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| T |
45355638 |
ttcaacagaatttgtttgatgtcgcaaaacacaaacgagatgcatgtattcagatcatacatacatgggatgagtttgtagcagctttgaatgaaaaaaa |
45355737 |
T |
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| Q |
209 |
gatgatcttagctccttggtgtgatgagaaggta |
242 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
45355738 |
gatgatcttagctccttggtgtgatgaggaggta |
45355771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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