View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4062_low_8 (Length: 262)
Name: NF4062_low_8
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 24809540 - 24809312
Alignment:
| Q |
17 |
ataatttgagaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagataggatgtcc |
116 |
Q |
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| T |
24809540 |
ataatttgaaaaaaccacgtaatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaaggaagataggatgtcc |
24809441 |
T |
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| Q |
117 |
ttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcaccatgttcatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24809440 |
ttttttccctcagctcggttagtgaatggctttgaaatttgtcttacaaagagacatgataataatcaaagaaactgaaacatatgtcaccatgttcatc |
24809341 |
T |
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| Q |
217 |
tcaactannnnnnnagtcactgttgtttt |
245 |
Q |
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| T |
24809340 |
tcaactatttttttagtcactgttgtttt |
24809312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 102
Target Start/End: Complemental strand, 29946405 - 29946339
Alignment:
| Q |
36 |
taatctatcaaatttgatcctagctaacatgtttgaatgatatacaacagatggaaacaaatgaagg |
102 |
Q |
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|||| ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||| ||||||||| |
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| T |
29946405 |
taatatatcaaatttgatcctacctaacatgtttaaatgatatacagcagacggaaataaatgaagg |
29946339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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