View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4062_low_9 (Length: 251)
Name: NF4062_low_9
Description: NF4062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4062_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 8816494 - 8816725
Alignment:
| Q |
4 |
atagaccatgtggaccagaaagaaaagagtgctggaaagcatttactatgcatcatatttatctattattacaaatcgaaacactaataaagccgttctg |
103 |
Q |
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| T |
8816494 |
atagaccatgtggatcagaaagaaaagagtgctggaaagcattgactatgcatcatatttatctattattacaaatcgaaacactaataaagccgttctg |
8816593 |
T |
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| Q |
104 |
gtatagagacttaggcacaattagtcgaaatctatggttatatgcttgtggctaagttacacaatagaatagtgttaagaatatataagtgcccgattgc |
203 |
Q |
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| T |
8816594 |
--atatagacttaagcacaattagtcgaaatctatgattatctacttgtggctaagttacacaatagaatagtgttaagtacatacaagtggccggttgc |
8816691 |
T |
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| Q |
204 |
actgccacattaattctaacattcttgcctcacc |
237 |
Q |
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|| |||||||| |||||||||| |||| |||||| |
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| T |
8816692 |
accgccacatttattctaacatccttgtctcacc |
8816725 |
T |
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