View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_high_10 (Length: 372)
Name: NF4063_high_10
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 40635890 - 40636252
Alignment:
| Q |
1 |
gaagaagaacaattacctgtacgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgctt |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40635890 |
gaagaaggacaattacctgtacgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgctt |
40635989 |
T |
|
| Q |
101 |
ttgcttctttgcttgtggaaacggtggcaaaactggatttgataattgatgaagttgaagaacttgggaggttggcgtgtttcaaagagtatacacctgg |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40635990 |
ttgcttctttgctcgtggaaacggtggcaaaactggatttgataattgatgaagttgaagaacttgggagattggcgtgtttcaaagagtatacacctgg |
40636089 |
T |
|
| Q |
201 |
cgatgagttttctattagttgtgagaaaccaagagttgatgttttggagaaccatttaccttctcatggaggagagtgattctgaatgggagcagggaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
40636090 |
cgatgagttttctattagttgtgagaaaccaagagttgatgttttggagaaccatttaccttctcatggaggagagtgattctgaatgggagtaaggaaa |
40636189 |
T |
|
| Q |
301 |
tacatcaatttcataatatataatactgattattcactaatatataaatgattgtgatgatgt |
363 |
Q |
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| T |
40636190 |
tacattaatttcataatatataatactgattattcactaatatataaatgattgtgatgatgt |
40636252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 40647859 - 40648213
Alignment:
| Q |
7 |
gaacaattacctgtacgtaaggtgttgagaagccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcttttgctt |
106 |
Q |
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| T |
40647859 |
gaacaattacaagaacgtaaggcattgagaagccagatgagtaaaattgttattactagtcttgagttttctgaagcattgccttttgctgcttttgttt |
40647958 |
T |
|
| Q |
107 |
ctttgcttgtggaaacggtggcaaaactggatttgataattgatgaagttgaagaacttgggaggttggcgtgtttcaaagagtatacacctggcgatga |
206 |
Q |
| |
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| |||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| ||||||| |||||||||||||||| || ||| ||||| |
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| T |
40647959 |
cattgcttgtggaaaccgtggcgaaactggacttaataattgatgaagttgaagaacttggtcggttggcatgtttcaaagagtatagacatggtgatga |
40648058 |
T |
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| Q |
207 |
gttttctattagttgtgagaaaccaagagttgatgttttggagaaccatttaccttctcatggaggagagtgattctgaatgggagcagggaaatacatc |
306 |
Q |
| |
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|||||| |||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| ||| | ||| ||||| |||||||||| |
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| T |
40648059 |
attttctgttagatgtgagaaaccaagagttgatgtgatggacaaccatttcccttctcatggaggagattgagtttgataaagagcaaggaaatacatt |
40648158 |
T |
|
| Q |
307 |
aatttcataatatataatactgattattcactaatatataaatgattgtgatgat |
361 |
Q |
| |
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| |||||| |||||||||| ||||||| ||| | |||| ||||||||||||| |
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| T |
40648159 |
attttcatgatatataatatcgattatttgctattctatatttgattgtgatgat |
40648213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 39 - 270
Target Start/End: Complemental strand, 4780199 - 4779968
Alignment:
| Q |
39 |
ccagatgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcttttgcttctttgcttgtggaaacggtggcaaaactggat |
138 |
Q |
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|||| |||||||||||||||||||||||||||| || ||||| ||| | ||||||||||||||||| ||||||||||||||||| || |||||| ||||| |
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| T |
4780199 |
ccagttgagtaaaattgctatcactagtcttgaattctctgaggcacttccttttgctgcttttgcatctttgcttgtggaaacagttgcaaaattggat |
4780100 |
T |
|
| Q |
139 |
ttgataattgatgaagttgaagaacttgggaggttggcgtgtttcaaagagtatacacctggcgatgagttttctattagttgtgagaaaccaagagttg |
238 |
Q |
| |
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| | ||||| |||||||||||||||||||| || | || || ||||||| || | ||||||||||| || | | | ||||||| |||| |||||| |
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| T |
4780099 |
cttgttattgaggaagttgaagaacttgggagattagattgctttaaagagtttagagctggcgatgagcttgttgtgacttgtgaggaacctcgagttg |
4780000 |
T |
|
| Q |
239 |
atgttttggagaaccatttaccttctcatgga |
270 |
Q |
| |
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|||||| | |||| | ||||||||||||||| |
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| T |
4779999 |
atgtttcgcggaacaacttaccttctcatgga |
4779968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 16865243 - 16865366
Alignment:
| Q |
107 |
ctttgcttgtggaaacggtggcaaaactggatttgataattgatgaagttgaagaacttgggaggttggcgtgtttcaaagagtatacacctggcgatga |
206 |
Q |
| |
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|||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||| |
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| T |
16865243 |
ctttgcttttggaaacggtgatgaaactcgacttaataattgatgaagttgaagaacttgggaggttagcgtgcttcaaagagtatatacctggtgatga |
16865342 |
T |
|
| Q |
207 |
gttttctattagttgtgagaaacc |
230 |
Q |
| |
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|||||| |||||| ||||||||| |
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| T |
16865343 |
attttctgttagttctgagaaacc |
16865366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 16861967 - 16862034
Alignment:
| Q |
44 |
tgagtaaaattgctatcactagtcttgagttttctgaagcattgccttttgctgcttttgcttctttg |
111 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16861967 |
tgagtaaaatggctatcactagtcttgagttttctgaagcattgccttttgctgcttttgcttctttg |
16862034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 51862864 - 51862940
Alignment:
| Q |
58 |
atcactagtcttgagttttctgaagcattgccttttgctgcttttgcttctttgcttgtggaaacggtggcaaaact |
134 |
Q |
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|||||||| |||||||| || |||||| | |||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
51862864 |
atcactagccttgagttctcagaagcactaccttttgctgctttcacttctttgcttgtggaaatggtggcaaaact |
51862940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 51822749 - 51822825
Alignment:
| Q |
58 |
atcactagtcttgagttttctgaagcattgccttttgctgcttttgcttctttgcttgtggaaacggtggcaaaact |
134 |
Q |
| |
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|||||||| |||||||| || |||||| |||| ||||||||||| ||||| |||| ||||| | |||||||||||| |
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| T |
51822749 |
atcactagccttgagttctcagaagcactgccctttgctgctttcacttctatgctagtggagatggtggcaaaact |
51822825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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