View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4063_high_11 (Length: 361)
Name: NF4063_high_11
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 36427510 - 36427844
Alignment:
| Q |
9 |
gacatcatcactgatttcatagccccaactggaacccaagttgatggcaacttcttcacattcaccggtttccgcgcacttcttccaccaaacatacagc |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36427510 |
gacatcctcactgatttcatagccccaactggaacccaagttgatggcaacttcttcacattcaccggtttccgcgcacttcttccaccaaacatacagc |
36427609 |
T |
|
| Q |
109 |
cctcaactttcaaagccttgaaagcaagcaaagcagaatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36427610 |
cctcaactttcaaagccttgaaagcaagcaaagcagaatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccat |
36427709 |
T |
|
| Q |
209 |
caatccaccacacacacaccctcgttcagccgagctactcttcctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcact |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36427710 |
caatccaccacacacacaccctcgttcagccgagctactcttcctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcact |
36427809 |
T |
|
| Q |
309 |
caaacactacaacccggtgacatgtttgtgtttcc |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
36427810 |
caaacactacaacccggtgacatgtttgtgtttcc |
36427844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 36421012 - 36421347
Alignment:
| Q |
8 |
ggacatcatcactgatttcatagccccaactggaacccaagttgatggcaacttcttcacattcaccggtttccgcgcacttcttccaccaaacatacag |
107 |
Q |
| |
|
||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| |
|
|
| T |
36421012 |
ggacatcctcactgacttcatagccccaaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaa |
36421111 |
T |
|
| Q |
108 |
ccctcaactttcaaagccttgaaagcaagcaaagcagaatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaacca |
207 |
Q |
| |
|
|||||| |||| || ||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
36421112 |
ccctcatttttcgtggcattgaaagcaagcaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaacca |
36421211 |
T |
|
| Q |
208 |
tcaatccaccacacacacaccctcgttcagccgagctactcttcctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcac |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
36421212 |
tcaatccaccacatacacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggttttgttgacacaaccaataagctattcac |
36421311 |
T |
|
| Q |
308 |
tcaaacactacaacccggtgacatgtttgtgtttcc |
343 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
36421312 |
tcagacactacaacctggtgacatgtttgtgtttcc |
36421347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 343
Target Start/End: Original strand, 36424537 - 36424871
Alignment:
| Q |
9 |
gacatcatcactgatttcatagccccaactggaacccaagttgatggcaacttcttcacattcaccggtttccgcgcacttcttccaccaaacatacagc |
108 |
Q |
| |
|
|||||| | ||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| | |
|
|
| T |
36424537 |
gacatccttactgacttcatagccccaaatggaacccaagttgatggcaacttcttcacatacaccggtttccgcgcccttactgtaccaaacatacaac |
36424636 |
T |
|
| Q |
109 |
cctcaactttcaaagccttgaaagcaagcaaagcagaatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccat |
208 |
Q |
| |
|
||||| |||| || ||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
36424637 |
cctcatttttcgtggcattgaaagcaagcaaaaaagaatttccagctcttgatggacaaagtgtatcatatgctgctctaatgtacccacctggaaccat |
36424736 |
T |
|
| Q |
209 |
caatccaccacacacacaccctcgttcagccgagctactcttcctcgcgaaaggttccctgaatgttggttttgtggacaccactaataagctattcact |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| || || ||||||| |||| |
|
|
| T |
36424737 |
caatccaccacacacacaccctcgttcagccgagctactcttcctcgttaaaggttcccttaatgttggtttcgttgacacaaccaacaagctatacact |
36424836 |
T |
|
| Q |
309 |
caaacactacaacccggtgacatgtttgtgtttcc |
343 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
36424837 |
caaacacttcaacccggtgacatgtttgtgtttcc |
36424871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 19144695 - 19144560
Alignment:
| Q |
115 |
ctttcaaagccttgaaagcaagcaaagcagaatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccatcaatcc |
214 |
Q |
| |
|
|||||||||| | |||||||||| |||||||||||| | | | ||||||||||| ||||||||||||| || || |||| | ||| ||||| |
|
|
| T |
19144695 |
ctttcaaagcaataaaagcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatcc |
19144596 |
T |
|
| Q |
215 |
accacacacacaccctcgttcagccgagctactctt |
250 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||| |
|
|
| T |
19144595 |
accacacacacacccacgttcagctgaactactctt |
19144560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 250
Target Start/End: Original strand, 19148298 - 19148433
Alignment:
| Q |
115 |
ctttcaaagccttgaaagcaagcaaagcagaatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccatcaatcc |
214 |
Q |
| |
|
|||||||||| | |||||||||| |||||||||||| | | | ||||||||||| ||||||||||||| || || |||| | ||| ||||| |
|
|
| T |
19148298 |
ctttcaaagcaataaaagcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatcc |
19148397 |
T |
|
| Q |
215 |
accacacacacaccctcgttcagccgagctactctt |
250 |
Q |
| |
|
||||||||||||||| |||||||| || |||||||| |
|
|
| T |
19148398 |
accacacacacacccacgttcagctgaactactctt |
19148433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University