View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_high_13 (Length: 342)
Name: NF4063_high_13
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 10011031 - 10011346
Alignment:
| Q |
17 |
cacatgcagcaactactttccttttaacaccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaagaagaagcaannn |
116 |
Q |
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| T |
10011031 |
cacatgcagcaactactttccttttaacaccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaaaaagaagcaattt |
10011130 |
T |
|
| Q |
117 |
nnnnnnnnnnnnn-atggaagaaagaccaatcgaacctatgnnnnnnntatagaagagaggtgctcctgttttggagaattggacatnnnnnnntttcct |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10011131 |
tttttttggtttttatggaagaaagaccaatcgaacctatgaaaaaaatatagaagagaggtgctcctgttttggagaattggacataaaaaattttcct |
10011230 |
T |
|
| Q |
216 |
taaaaattgtctttttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10011231 |
taaaaattgtctttttgttctatattctttctcgtttctgaagcagaagagttatttttctttcctttttcgaagggagacataaatgatttagaagagt |
10011330 |
T |
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| Q |
316 |
tggacatcaaattcat |
331 |
Q |
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| T |
10011331 |
tggacatcaaattcat |
10011346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 561565 - 561652
Alignment:
| Q |
169 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
256 |
Q |
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| T |
561565 |
aagagaggtgttcctgttttggagaattggacatcaaattttttccttcaaaattgtccttttcttctatattctttctcgtttctga |
561652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 561424 - 561487
Alignment:
| Q |
40 |
ttaacaccaagttctctccttccattgtctgtatgctttcaatacacactttcctttaaacaaa |
103 |
Q |
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| T |
561424 |
ttaacaccaagttctctcattcaattgtatgtatgctttcattagacactttcctttaaacaaa |
561487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 256
Target Start/End: Complemental strand, 17688868 - 17688782
Alignment:
| Q |
169 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
256 |
Q |
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| T |
17688868 |
aagagaggtgttcctgttttggagaattagacatcaaatttttt-ctttaaaattgtccttttcttctatattctttctcgtttctga |
17688782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 17689007 - 17688937
Alignment:
| Q |
42 |
aacaccaagttctctcctt---ccattgtctgtatgctttcaatacacactttcctttaaacaaagaagaa |
109 |
Q |
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| T |
17689007 |
aacaccaagttctctcattattcaattgtatgtatgctttcattagacactttcctttaaacaaaaaagaa |
17688937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 1678868 - 1678954
Alignment:
| Q |
169 |
aagagaggtgctcctgttttggagaattggacatnnnnnnntttccttaaaaattgtctttttgttctatattctttctcgtttctga |
256 |
Q |
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| T |
1678868 |
aagagaggtgttcctgttttggagaattagacatcaaattttttc-ttcaaaattgtccttttcttctatattctttctcgtttctga |
1678954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 1678749 - 1678795
Alignment:
| Q |
63 |
attgtctgtatgctttcaatacacactttcctttaaacaaagaagaa |
109 |
Q |
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| T |
1678749 |
attgtatgtatgctttcattagacactttcctttaaacaaaaaagaa |
1678795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 4778812 - 4778852
Alignment:
| Q |
63 |
attgtctgtatgctttcaatacacactttcctttaaacaaa |
103 |
Q |
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| T |
4778812 |
attgtatgtatgctttcattagacactttcctttaaacaaa |
4778852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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