View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_high_15 (Length: 292)
Name: NF4063_high_15
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 38359246 - 38359509
Alignment:
| Q |
19 |
taggagttagaaatctttcagatatcaatgaagcaggtaaccttaaagtttgttgggatatcatgcaatcagatttacaatgggatcaattcattagaag |
118 |
Q |
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| T |
38359246 |
taggagttagaaatctttcagatatcaatgaagcaggtaaccttaaagtttgctgggatatcatgcaatcagatttacaatgggatcagttcattagaag |
38359345 |
T |
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| Q |
119 |
caggatcctaaggaacnnnnnnnccagtcgattatcatgtttcttcatctgttttgattggtgctaggcataaatactctactgtgctagaaaatgtgtc |
218 |
Q |
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| T |
38359346 |
caggatcctaaggaacaaaaaa-ccagtcaattatcatgtttcgtcatctgttttgagtggtgctaggcataaatactctactgtgctagaaaatgtgtc |
38359444 |
T |
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| Q |
219 |
ttgaaatattcgaaatggggaaaatattaacttctggattgattcctggtgtagagagcctttga |
283 |
Q |
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| T |
38359445 |
ttgaaatattggaaatggggaaaatattaacttctggattgattcctggtgtagagagcctttga |
38359509 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 11983816 - 11983901
Alignment:
| Q |
36 |
tcagatatcaatgaagcaggtaaccttaaagtttgttgggatatcatgcaatcagatttacaatgggatcaattcattagaagcag |
121 |
Q |
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| T |
11983816 |
tcagatattaatgaagaaggtaatcttaagaactgttgggatattatgcagtcagatttacaatgggctcaatttatgagaagcag |
11983901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 16182548 - 16182640
Alignment:
| Q |
30 |
aatctttcagatatcaatgaagcaggtaaccttaaagtttgttgggatatcatgcaatcagatttacaatgggatcaattcattagaagcagg |
122 |
Q |
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| T |
16182548 |
aatctatcagatattaatgaagcaagtaatttgaagaattgttgggacatcatgcagtcagacttacaatgggctcaattagttagaagcagg |
16182640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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