View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4063_high_2 (Length: 699)
Name: NF4063_high_2
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 20 - 600
Target Start/End: Complemental strand, 42672128 - 42671546
Alignment:
| Q |
20 |
caatatggatattggcattgtaaaaatgaagagttaatggatagctaagacaccaagaacaacattatgccacttatctatatagtactaatgggaagag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
42672128 |
caatatggatattggcattgtaaaaatgaagagttaatagatagctaagacaccaagaacaacattatactacttatctatatagtactaatgggaagag |
42672029 |
T |
|
| Q |
120 |
aaaaggccaaataagttatgtgtttgaaaaggctaagaaattattttatattccatgtggacgacaatatttctagtggtcacatgtgtgtaacccacaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42672028 |
aaaaggccaaataagttatgtgtttgaaaaggctaagaaattattttatattccatgtggacgacaatatttctagtggtcacatgtgtgtaacccacaa |
42671929 |
T |
|
| Q |
220 |
aaatgaggatttggattgtgagcagtcacaaatattacgcattcatacaatcaacacattgtcggtcatctcttnnnnnnnncacattggtggtcattgg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42671928 |
aaatgaggatttggattgtgagcagtcacaaatatcacgcattcatacaatcaacacattgtcggtcatctcttaaaaaaaacacattggtggtcattgg |
42671829 |
T |
|
| Q |
320 |
atcaagatcagacaatctaggcttgaaaagcacgatattttggagttaaaaaa-tatcaaaatgtgttttctatttgtatgaatgcatggatttattaca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42671828 |
atcaagatcagacaatctaggcttgaaaagcacgatattttggagttaaaaaaatatcaaaatgtgttttctatttgtatgaatgcatggatttattaca |
42671729 |
T |
|
| Q |
419 |
gtaagcaatccaaatccacaaaatgagctgtaccaagctgatgtttatggcttagtcacgttcttgacaatcacatatagaaaagtaatatattctaaac |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42671728 |
gtaagcaatccaaatccacaaaatgagctgtaccaagctgatgtttatggcttagtcacgttcttgacaatcacatatagaaaagtaatatattctaaac |
42671629 |
T |
|
| Q |
519 |
tttatatatgctgtcagatgttattccaactcaacaaggctttacatt-ttttaacctctttcaattacaaaatgattatata |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42671628 |
tttatatatgctgtcagatgttattccaactcaacaaggctttacatttttttaacctctttcaattacaaaatgattatata |
42671546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University