View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_high_5 (Length: 465)
Name: NF4063_high_5
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 23 - 433
Target Start/End: Complemental strand, 38173845 - 38173438
Alignment:
| Q |
23 |
cctcctcctctttcggatcctcctgttgcgtgttccggtgttgaaaatgaagttaatgaaaatgtcgagattattgatgctgttgttagaagcgagatta |
122 |
Q |
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| T |
38173845 |
cctcctcctctttcggatcctcccgttgcgtgttccggtgttgaaaatgaagttaatgaaaatgtcgagattattgatgctgttgttagaagcgagatta |
38173746 |
T |
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| Q |
123 |
tcgctaatgatgatgaaattagaggcgacattattgctaataactatgatggtactcaaatgattgatattagagatgagattattgccaatgatgatga |
222 |
Q |
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| T |
38173745 |
tctctaatgatgatgaaattagaggcgacattattactaataactatgatggtactcaaatgattgatattagagatgagattattgccaatgatgatgg |
38173646 |
T |
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| Q |
223 |
taatgaaatggatagtgatagtagttggattgaaagaaccgagagtgaggagtatgagtatgaagaaggcgagatcgttgattctaattctgaagataaa |
322 |
Q |
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| T |
38173645 |
taatgaaatggatagtgatagtagttggattgaaagaaccgagagtgaggagtatgagtatgaagaaggcgagatcgttgattctaattctgaagataaa |
38173546 |
T |
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| Q |
323 |
gaagttgattccgaggaaacgactagctggtgctttgatgttggcggcggcggcgatgatgatgatcagtctcagtctcaagaaagtagaacgaacgagc |
422 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38173545 |
gaagatgattccgaggaaacgactagctggtgctttgatgttggc---ggcgacaatgatgatgatcagtctcagtctcaagaaagtagaacgaacgagc |
38173449 |
T |
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| Q |
423 |
ttgaggtattg |
433 |
Q |
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| T |
38173448 |
ttgaggtattg |
38173438 |
T |
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