View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4063_low_10 (Length: 400)
Name: NF4063_low_10
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 121 - 383
Target Start/End: Original strand, 2488075 - 2488337
Alignment:
| Q |
121 |
ggtatccaactaaagatcgattaattcaagagattaatatctctatctactaataagggactcaattaaaatcaaaccaaaactttgtatagactaatcc |
220 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488075 |
ggtatccgactaaagatcgattaattcaagagattaatttctctatctactaataagggattcaattaaaatcaaaccaaaactttgtatagactaatcc |
2488174 |
T |
|
| Q |
221 |
aacataaaaattgttgacactagcatagtttgtacaagaaaattacattcctaaattctaaactctcaaatgtaaagtgtcgaaaagatttgaacttttt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488175 |
aacataaaaattgttgacactagcatagtttgaacaagaaaattacattcctaaattctaaactctcaaatgtaaagtgtcgaaaagatttgaacttttt |
2488274 |
T |
|
| Q |
321 |
gagattgcatggaattatattataacccgtagcagctcatatgaacaaaaataaggcaacaat |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488275 |
gagattgcatggaattatattataacccgtagcagctcatatgaacaaaaataaggcaacaat |
2488337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 2487961 - 2488013
Alignment:
| Q |
7 |
tccaagaaaatataatatgtactcatctctagctatatttgaatttctttaac |
59 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2487961 |
tccaaaaatatataatatgtacttatctctagctatatttgaatttctttaac |
2488013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University