View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_low_16 (Length: 347)
Name: NF4063_low_16
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_16 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 127 - 347
Target Start/End: Original strand, 8951186 - 8951406
Alignment:
| Q |
127 |
tcatgccaacaccaaaactttgggttttatcattaaagccaaaaacatccttaaagatggcttcactcggtaaggaagctctagaaactcttccttctgg |
226 |
Q |
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| T |
8951186 |
tcatgccaacaccaaaactttgggttttatcattaaagccaaaaacatccttaaagatggcttcactcggtaaggaagctctagaaactcttccttctgg |
8951285 |
T |
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| Q |
227 |
tatagtcacttgacttccttcggccctttatgtactaatgttccttatgtgcacatcaaccaccttgctttgagaattattgatgtttgtgaattgtatc |
326 |
Q |
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| T |
8951286 |
tatagtcacttgacttccttcggccctttatgtactaatgttccttatgtgcacatcaacgaccttgctttgagaattattgatgtttgtgaattgtatc |
8951385 |
T |
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| Q |
327 |
cccgtagcctcgccctcctct |
347 |
Q |
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| T |
8951386 |
cccatagcctcgccctcctct |
8951406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 8951008 - 8951119
Alignment:
| Q |
20 |
gtgagttgggtaaaaattgttggacccaaaatttggggtg--gtctaggaattcacatgatatgagatgataagacttctcttgtgggaaagcatgtttg |
117 |
Q |
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| T |
8951008 |
gtgagttgggtaaaaattgttagacccaaaatttggggtgtggtctagaaattcagatgacatgagatgataagacttctcttgtgggaaagcatgtttg |
8951107 |
T |
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| Q |
118 |
ggacatgcttca |
129 |
Q |
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| T |
8951108 |
ggacatgcttca |
8951119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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