View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_low_18 (Length: 307)
Name: NF4063_low_18
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 35050235 - 35049944
Alignment:
| Q |
7 |
agaaaattgtacaaaagtatcaaaattgttgtatacaaatatcatttctctacttacattgatctaaaacaattgtgatatcaagaatgggtgaaatact |
106 |
Q |
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|||||||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35050235 |
agaaaattatacaaaagtatcaaaattattgtgtacaaatatcatttctctacttgcattgatctaaaacaattgtgatatcaagaatgggtgaaatact |
35050136 |
T |
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| Q |
107 |
ggaatcatgtactacatccaaaaaccatctaagaggtgtctttatttatgtcgattaccctcttttcattgttgatacatttgagttatttctcacgtcc |
206 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35050135 |
ggaatcatgtactacatccaaaaaccatctaaaaggtgtctttattcatgtcgattaccctcttttcattgttgatacatttgagttatttctcacgtcc |
35050036 |
T |
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| Q |
207 |
ctgnnnnnnnnnnnnnnntaaatacaaatttacaaacattaatagtaaagaaagcaattatacaaatatacttaattctccaacccctatgct |
299 |
Q |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35050035 |
ctgaaaaaaataaaaaaataaatacaaatttacaaacattaat-gtaaagaaagcaattatacaaatatacttaattctccaacccctatgct |
35049944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 35159685 - 35159739
Alignment:
| Q |
225 |
taaatacaaatttacaaacattaatagtaaagaaagcaattatacaaatatactta |
280 |
Q |
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||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
35159685 |
taaatacaaatgtacaaacattaatagtaaagaaa-caaatatacaaataaactta |
35159739 |
T |
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