View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_low_22 (Length: 265)
Name: NF4063_low_22
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 11754527 - 11754360
Alignment:
| Q |
19 |
ggtgtaaatgctgctgatgctgattcaagtggtttggttaatgctgctgatgctgctggcgctgatatcaattgtgtggatgctaatggaaaccaaccag |
118 |
Q |
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| T |
11754527 |
ggtgtaaatgcttctgatgctgattcaagtggtttggttaatgctgctgatgctgctggcgctgatatcaatcgtgtggatgcaaatggaaaccatccgg |
11754428 |
T |
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| Q |
119 |
tggatgttattgttgttcctcataagctcgaggttgtgaaaacaagtcttgaagaactgcttttatca |
186 |
Q |
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| T |
11754427 |
tggatgttatggttgttccacataagctcgaggttgtgaaaacaagtcttgaagaactgcttttatca |
11754360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 11754291 - 11754218
Alignment:
| Q |
180 |
tttatcatctgctgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattctg |
253 |
Q |
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| T |
11754291 |
tttatcatctgctgaaaatgaatctccatcctctcctgtggctccaaagtttaccgacacagctgttaattctg |
11754218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 9315020 - 9314948
Alignment:
| Q |
180 |
tttatcatctgctgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattct |
252 |
Q |
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| T |
9315020 |
tttatcatctgctgaaaatggatctccatcctctcctgtggctcccaagtttacagatacagctgttaattct |
9314948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 11688626 - 11688566
Alignment:
| Q |
192 |
tgaaaatggatctccatcctctcctgtggctccaaagttttccgacacagctgttaattct |
252 |
Q |
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| T |
11688626 |
tgaaaaggggtctccatcctctcccgtggctccaaagttgaccgacacagctgttagttct |
11688566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 9315158 - 9315108
Alignment:
| Q |
126 |
tattgttgttcctcataagctcgaggttgtgaaaacaagtcttgaagaact |
176 |
Q |
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| T |
9315158 |
tattgttgttcctcataagctcgaaggtgttaaaacaattcttgaagaact |
9315108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 9315223 - 9315158
Alignment:
| Q |
73 |
gctggcgctgatatcaattgtgtggatgctaatggaaaccaaccagtggatgttattgttgttcct |
138 |
Q |
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| T |
9315223 |
gctggtgctgatatcaattctgtggatgctaatgggaaacgccctgtggatgttatcgttgttcct |
9315158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 11688802 - 11688737
Alignment:
| Q |
73 |
gctggcgctgatatcaattgtgtggatgctaatggaaaccaaccagtggatgttattgttgttcct |
138 |
Q |
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| T |
11688802 |
gctggcgctgacatctattgtgtcgatgctaatgggaaccgtccaatggatgttattgttcttcct |
11688737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 11688737 - 11688687
Alignment:
| Q |
126 |
tattgttgttcctcataagctcgaggttgtgaaaacaagtcttgaagaact |
176 |
Q |
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| T |
11688737 |
tattgttgttccccataagctcgaagtcgtgaaaagaagtcttgaacaact |
11688687 |
T |
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