View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4063_low_3 (Length: 577)

Name: NF4063_low_3
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4063_low_3
NF4063_low_3
[»] chr5 (5 HSPs)
chr5 (12-319)||(41701681-41701978)
chr5 (361-554)||(41701449-41701639)
chr5 (441-550)||(7279813-7279922)
chr5 (425-550)||(41099888-41100013)
chr5 (440-502)||(39045531-39045593)
[»] chr7 (3 HSPs)
chr7 (425-550)||(18261627-18261752)
chr7 (425-550)||(33623603-33623728)
chr7 (425-550)||(33631709-33631834)
[»] chr4 (2 HSPs)
chr4 (425-550)||(3938493-3938618)
chr4 (440-550)||(45066506-45066616)
[»] chr3 (3 HSPs)
chr3 (440-550)||(22163629-22163739)
chr3 (425-549)||(3423535-3423659)
chr3 (425-503)||(30280774-30280852)
[»] scaffold0240 (1 HSPs)
scaffold0240 (440-550)||(17376-17486)


Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 41701978 - 41701681
Alignment:
Q  12 atgaatcacgttagaagagaaaacaaatctaatttatctatatagcacaatagatgtaccgtctgtaactgtcactagagtcaaagactactctacaatc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||  ||||||||||||||||||||||||    
T  41701978 atgaatcacgttagaagagaaaacaaatctaatttatctatatagcgcaatagatgtagcgtctgtagctgtcatcagagtcaaagactactctacaatc 41701879  T
Q  112 gatgaacggacaatctacaatgttgaagaaacagtgactacaaccataattggagattggaaaagattggggagcaactctacttttcaatctccgatta 211  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||          ||||||||||||||| ||||||||||||||    
T  41701878 gatgaacggacaatctacaatgttgaagagacagtgactacaaccataattggagattgg----------ggagcaactctacttctcaatctccgatta 41701789  T
Q  212 cggttactgtcactgccgctgaaacaatacatgttctacgtccatcattatagacttgtcaatgattttggtaacaattacggaggcttcatctattgtg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41701788 cggttactgtcactgccgctgaaacaatacatgttctacgtccatcattatagagttgtcaatgattttggtaacaattacggaggcttcatctattgtg 41701689  T

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Target: chr5; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 361 - 554
Target Start/End: Complemental strand, 41701639 - 41701449
Alignment:
Q  361 aatatattacgagtattatttgaataagtatattatgacttatgagtattaattaagcaagtagtcatagatgtgccaacacaagcttcatgagtagaaa 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||||||||||| |||||||||||||||||||||    
T  41701639 aatatattacgagtattatttgaataagtatattatgacttatgagtattaa----gcaggtagtcatagatgtgccagcacaagcttcatgagtagaaa 41701544  T
Q  461 agaaagtcttt-ggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctattttttctattaatagaatgtataatgtatt 554  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  41701543 agaaagtcttttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctaatttctctattaatagaatgtataatgtatt 41701449  T

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Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 441 - 550
Target Start/End: Original strand, 7279813 - 7279922
Alignment:
Q  441 acaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctattttttctattaataga 540  Q
    |||||||||||| |||  ||| ||||||||||||||| |||||| ||||||||||||||||| |||||| ||||||| ||||| ||| |||||||| |||    
T  7279813 acaagcttcatgggtaataaaaaaagtctttggtgcagcaaagattatttcaagtgttaatgttagtgtttttcaacaagctaatttctctattaagaga 7279912  T
Q  541 atgtataatg 550  Q
    ||||||||||    
T  7279913 atgtataatg 7279922  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 425 - 550
Target Start/End: Complemental strand, 41100013 - 41099888
Alignment:
Q  425 tcatagatgtgccaacacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctat 524  Q
    |||| ||||||||  ||||||||||||| |||  ||| ||||||||||||||| |||||||||||||||||||| |||| |||   ||||||| |||||     
T  41100013 tcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtagttttcaacaagctaa 41099914  T
Q  525 tttttctattaatagaatgtataatg 550  Q
    ||| |||||||| |||||||||||||    
T  41099913 tttatctattaagagaatgtataatg 41099888  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 440 - 502
Target Start/End: Complemental strand, 39045593 - 39045531
Alignment:
Q  440 cacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatg 502  Q
    |||||||||||||||||| ||  ||||||||||||||| ||||||| ||||||| ||||||||    
T  39045593 cacaagcttcatgagtagtaagaaaagtctttggtgcagcaaagaccatttcaattgttaatg 39045531  T

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Target: chr7 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 425 - 550
Target Start/End: Complemental strand, 18261752 - 18261627
Alignment:
Q  425 tcatagatgtgccaacacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctat 524  Q
    |||| |||||||| |||||||||||||| |||  ||| ||||||||||||||| |||||||||||||||||||| |||| ||| | ||||||| |||||     
T  18261752 tcatggatgtgcctacacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtatttttcaacaagctaa 18261653  T
Q  525 tttttctattaatagaatgtataatg 550  Q
    ||| |||||||| |||||||||||||    
T  18261652 tttctctattaagagaatgtataatg 18261627  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 425 - 550
Target Start/End: Complemental strand, 33623728 - 33623603
Alignment:
Q  425 tcatagatgtgccaacacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctat 524  Q
    |||| ||||||||  ||||||||||||| |||  ||| ||| ||||||||||| |||||||||||||||||||| |||| ||| | ||||||| |||||     
T  33623728 tcatggatgtgcctgcacaagcttcatgggtaataaaaaaaatctttggtgcagcaaagactatttcaagtgttgatggcagtatttttcaacaagctaa 33623629  T
Q  525 tttttctattaatagaatgtataatg 550  Q
    ||| |||||||| |||||||||||||    
T  33623628 tttctctattaagagaatgtataatg 33623603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 425 - 550
Target Start/End: Complemental strand, 33631834 - 33631709
Alignment:
Q  425 tcatagatgtgccaacacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctat 524  Q
    |||| ||||||||  ||||||||||||| |||  ||| ||||||||||||||| |||||||||||||||||||| ||||  || | ||||||| |||||     
T  33631834 tcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggctgtatttttcaacaagctaa 33631735  T
Q  525 tttttctattaatagaatgtataatg 550  Q
    ||| |||||||| |||||||||||||    
T  33631734 tttctctattaagagaatgtataatg 33631709  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 425 - 550
Target Start/End: Complemental strand, 3938618 - 3938493
Alignment:
Q  425 tcatagatgtgccaacacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctat 524  Q
    |||| ||||||||  ||||||||||||| |||  ||| ||||||||||||||| |||||||||||||||||||| |||| ||| | ||||||| |||||     
T  3938618 tcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtatttttcaacaagctaa 3938519  T
Q  525 tttttctattaatagaatgtataatg 550  Q
    ||| |||||||| |||||||||||||    
T  3938518 tttctctattaagagaatgtataatg 3938493  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 550
Target Start/End: Original strand, 45066506 - 45066616
Alignment:
Q  440 cacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctattttttctattaatag 539  Q
    ||||||||||||| |||  ||| ||||||||||||||| |||||||||||||||||||| |||| | | | ||||||| ||||| ||| |||||||| ||    
T  45066506 cacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggaaatatttttcaacaagctaatttctctattaagag 45066605  T
Q  540 aatgtataatg 550  Q
    |||||||||||    
T  45066606 aatgtataatg 45066616  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 440 - 550
Target Start/End: Original strand, 22163629 - 22163739
Alignment:
Q  440 cacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctattttttctattaatag 539  Q
    ||||||||||||| |||  ||| ||||||||||||||| |||||||||||||||||||| |||| ||| | ||||||| ||||| ||| |||||||| ||    
T  22163629 cacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtatttttcaacaagctaatttctctattaagag 22163728  T
Q  540 aatgtataatg 550  Q
    |||||||||||    
T  22163729 aatgtataatg 22163739  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 425 - 549
Target Start/End: Complemental strand, 3423659 - 3423535
Alignment:
Q  425 tcatagatgtgccaacacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctat 524  Q
    |||| ||||||||  ||||||||||||| |||  ||| ||||||||||||||| |||||||||||||||||||| |||| ||| | ||||||| |||||     
T  3423659 tcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatggcagtatttttcaacaagctaa 3423560  T
Q  525 tttttctattaatagaatgtataat 549  Q
    ||| |||||||  ||||||||||||    
T  3423559 tttctctattaggagaatgtataat 3423535  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 425 - 503
Target Start/End: Complemental strand, 30280852 - 30280774
Alignment:
Q  425 tcatagatgtgccaacacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatgg 503  Q
    |||| ||||||||  ||||||||||||| |||  ||| ||||||||||||||| |||||||||||||||||||| ||||    
T  30280852 tcatggatgtgcctgcacaagcttcatgggtaataaaaaaagtctttggtgcagcaaagactatttcaagtgttgatgg 30280774  T

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Target: scaffold0240 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 550
Target Start/End: Original strand, 17376 - 17486
Alignment:
Q  440 cacaagcttcatgagtagaaaagaaagtctttggtgcatcaaagactatttcaagtgttaatggtagtgtatttcaacgagctattttttctattaatag 539  Q
    |||||||| |||| |||  ||| ||||||||||||||| |||||||||||||||||||| |||| ||| | ||||||| ||||| ||| |||||||| ||    
T  17376 cacaagctccatgggtaataaaaaaagtctttggtgcaacaaagactatttcaagtgttgatggcagtatttttcaacaagctaatttctctattaaaag 17475  T
Q  540 aatgtataatg 550  Q
    |||||||||||    
T  17476 aatgtataatg 17486  T

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