View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_low_30 (Length: 232)
Name: NF4063_low_30
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 42983777 - 42983608
Alignment:
| Q |
20 |
aatactctgtctccaatcttttcaaacaaaaaacaggt----caaaaaccttcccaacacaatggcctacaaagttgaaaataattgtcaaaaggcctac |
115 |
Q |
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| T |
42983777 |
aatactctgtctccaatcttttcaaacaaaaaacaggttaatcaaaaaccttcccaacacaatggcctacaaagttgaaaataattgtcaaaaggcctac |
42983678 |
T |
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| Q |
116 |
caatcaaatttgaaaactgtgacatcttctgtgaagaaatcatgcaaacattaaatactatggatattct |
185 |
Q |
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| T |
42983677 |
caatcaaatttgaaaactgtgacatcttctctgaagaaatcatgcaaacattaaatactatggatattct |
42983608 |
T |
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