View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_low_33 (Length: 227)
Name: NF4063_low_33
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 54154877 - 54155102
Alignment:
| Q |
1 |
tgcatcgatcgtttactttagtatatttcttgattgtttggttagctttccgtttattagggagcaccatagtcgataataatttccaaagaaagcgcta |
100 |
Q |
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| T |
54154877 |
tgcatcgatcgtttactttagtatatttcttgattgtttggttagctttccgtttattagggagcaccatagtctataataatt-ccaaagaaagcgcta |
54154975 |
T |
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| Q |
101 |
aaagctattgcaaactgatgcatcatgaatttgctttaacagccccgttatagattatttacgttagaaaaacatgttagaacagtatgcaaggaactgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
54154976 |
aaagctattgcaaactgatgcatcatgaatttgctttaacagccccgttatagattgtttacgttagaaaaacatgttaaaacagtatgcaaggcactgt |
54155075 |
T |
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| Q |
201 |
atctaagtaattctcctaataatacaa |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
54155076 |
atctaagtaattctcctaataatacaa |
54155102 |
T |
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