View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4063_low_35 (Length: 207)

Name: NF4063_low_35
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4063_low_35
NF4063_low_35
[»] chr1 (23 HSPs)
chr1 (149-207)||(46903595-46903653)
chr1 (151-207)||(28457237-28457293)
chr1 (149-207)||(40053031-40053089)
chr1 (148-207)||(21446105-21446164)
chr1 (149-207)||(644821-644879)
chr1 (149-207)||(2827598-2827656)
chr1 (149-207)||(27787614-27787672)
chr1 (149-207)||(31666094-31666152)
chr1 (149-207)||(49615163-49615221)
chr1 (149-206)||(24158776-24158833)
chr1 (149-201)||(44714374-44714426)
chr1 (149-207)||(6396452-6396510)
chr1 (149-207)||(37741840-37741898)
chr1 (149-204)||(8312273-8312328)
chr1 (149-207)||(43757711-43757769)
chr1 (149-186)||(11038402-11038439)
chr1 (155-206)||(30596840-30596891)
chr1 (76-145)||(9084257-9084326)
chr1 (151-203)||(19427645-19427696)
chr1 (151-206)||(21263149-21263204)
chr1 (155-207)||(8577396-8577448)
chr1 (155-207)||(31244629-31244681)
chr1 (155-207)||(37947114-37947166)
[»] chr8 (11 HSPs)
chr8 (149-207)||(45405723-45405781)
chr8 (149-207)||(5742545-5742603)
chr8 (149-204)||(32674120-32674175)
chr8 (149-207)||(28156328-28156386)
chr8 (151-207)||(38939082-38939138)
chr8 (155-207)||(42651045-42651097)
chr8 (150-207)||(34578226-34578283)
chr8 (144-207)||(33635700-33635763)
chr8 (149-203)||(18550108-18550162)
chr8 (149-203)||(25430775-25430829)
chr8 (150-207)||(34883289-34883346)
[»] chr7 (14 HSPs)
chr7 (149-207)||(2600422-2600480)
chr7 (149-207)||(37970058-37970116)
chr7 (149-207)||(384676-384734)
chr7 (149-207)||(640517-640575)
chr7 (153-207)||(28548127-28548181)
chr7 (149-201)||(27943088-27943140)
chr7 (155-207)||(41458794-41458846)
chr7 (149-204)||(36108300-36108354)
chr7 (152-207)||(47379685-47379740)
chr7 (149-207)||(11070353-11070411)
chr7 (149-194)||(32747370-32747415)
chr7 (149-203)||(23034201-23034255)
chr7 (149-183)||(27383814-27383848)
chr7 (149-204)||(33341012-33341068)
[»] chr5 (14 HSPs)
chr5 (149-207)||(3518308-3518366)
chr5 (149-207)||(35358823-35358881)
chr5 (152-207)||(8761772-8761827)
chr5 (149-207)||(10469835-10469893)
chr5 (149-207)||(29765956-29766014)
chr5 (149-194)||(1108140-1108185)
chr5 (150-207)||(12612906-12612963)
chr5 (150-207)||(31625965-31626022)
chr5 (151-204)||(34698904-34698956)
chr5 (168-207)||(5005238-5005277)
chr5 (149-203)||(37821029-37821083)
chr5 (149-206)||(17574112-17574169)
chr5 (148-207)||(35616688-35616747)
chr5 (155-207)||(43152954-43153006)
[»] chr4 (17 HSPs)
chr4 (149-207)||(26442276-26442334)
chr4 (149-207)||(1987601-1987659)
chr4 (149-207)||(30250186-30250244)
chr4 (149-207)||(46309011-46309069)
chr4 (152-206)||(34538056-34538110)
chr4 (149-201)||(46686356-46686408)
chr4 (144-204)||(55960828-55960888)
chr4 (150-204)||(9827874-9827928)
chr4 (149-207)||(37732074-37732132)
chr4 (149-206)||(4949122-4949179)
chr4 (151-207)||(6093495-6093551)
chr4 (149-198)||(45418197-45418245)
chr4 (144-196)||(35037718-35037770)
chr4 (149-207)||(36946980-36947038)
chr4 (149-207)||(45678388-45678446)
chr4 (155-207)||(29863676-29863728)
chr4 (155-207)||(46799880-46799932)
[»] chr2 (21 HSPs)
chr2 (149-207)||(38724205-38724263)
chr2 (149-207)||(40721896-40721954)
chr2 (149-207)||(1151654-1151712)
chr2 (149-207)||(24727527-24727585)
chr2 (149-207)||(34373133-34373191)
chr2 (149-207)||(43026061-43026119)
chr2 (150-207)||(9377647-9377704)
chr2 (149-205)||(304880-304936)
chr2 (149-207)||(27328997-27329055)
chr2 (150-207)||(4858238-4858295)
chr2 (149-204)||(11728009-11728064)
chr2 (154-207)||(25094477-25094530)
chr2 (153-207)||(37827677-37827731)
chr2 (147-207)||(23141479-23141539)
chr2 (147-207)||(23553269-23553329)
chr2 (147-207)||(30340119-30340179)
chr2 (153-207)||(13850076-13850130)
chr2 (149-207)||(35518400-35518458)
chr2 (149-207)||(8757669-8757727)
chr2 (153-207)||(33569693-33569747)
chr2 (149-203)||(34141572-34141626)
[»] chr3 (25 HSPs)
chr3 (149-207)||(2280302-2280360)
chr3 (149-207)||(50025573-50025631)
chr3 (149-206)||(14847406-14847463)
chr3 (146-207)||(16295589-16295650)
chr3 (150-207)||(29533886-29533943)
chr3 (151-207)||(33074998-33075054)
chr3 (153-207)||(10565177-10565230)
chr3 (149-207)||(38471767-38471825)
chr3 (155-207)||(47140569-47140621)
chr3 (149-191)||(3210564-3210606)
chr3 (149-207)||(9557820-9557878)
chr3 (150-207)||(25806413-25806470)
chr3 (153-207)||(25559829-25559883)
chr3 (149-207)||(33972008-33972066)
chr3 (149-204)||(1261263-1261318)
chr3 (149-204)||(27276862-27276917)
chr3 (144-203)||(29555724-29555783)
chr3 (149-207)||(36301098-36301154)
chr3 (149-196)||(52383135-52383182)
chr3 (149-207)||(9027738-9027796)
chr3 (149-207)||(31763932-31763990)
chr3 (153-207)||(42643362-42643416)
chr3 (149-207)||(43149231-43149289)
chr3 (149-187)||(52381248-52381286)
chr3 (152-204)||(884665-884717)
[»] chr6 (6 HSPs)
chr6 (149-207)||(34976741-34976799)
chr6 (153-207)||(3335350-3335404)
chr6 (149-207)||(22422275-22422333)
chr6 (147-176)||(12737392-12737421)
chr6 (149-206)||(35050297-35050354)
chr6 (155-207)||(608555-608607)
[»] scaffold0036 (1 HSPs)
scaffold0036 (152-207)||(54553-54608)
[»] scaffold0592 (1 HSPs)
scaffold0592 (157-207)||(1035-1085)
[»] scaffold0014 (1 HSPs)
scaffold0014 (149-203)||(145176-145230)


Alignment Details
Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 46903653 - 46903595
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46903653 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 46903595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 28457237 - 28457293
Alignment:
Q  151 gtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28457237 gtagtgatattttaacaaccattttggtacaacctttgagacaactttattgttctc 28457293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 40053089 - 40053031
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  40053089 gagtagtgatattttaacaactattttggtacaatctttgagacaactttgttgttctc 40053031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 21446105 - 21446164
Alignment:
Q  148 ggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  21446105 ggagtagtgatattttgataaccattttggtacaacctttgagacaactttgttgatctc 21446164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 644879 - 644821
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  644879 gagtagtgatattttgacaaccattttggtacaacatttgagacaactttattgttctc 644821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 2827598 - 2827656
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  2827598 gagtagtgatattttgataaccattttggtacaacctttgagacaattttgttgttctc 2827656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 27787672 - 27787614
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  27787672 gagtagtgatagtttgacaaccattttggtacaacttttgagacaactttgttgttctc 27787614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 31666094 - 31666152
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  31666094 gagtagtaatattttgacaaccattttggtacaatctttgagacaactttgttgttctc 31666152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 49615163 - 49615221
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||    
T  49615163 gagtagtgatattttgacaaccattttggtacaatctttgagacaactttattgttctc 49615221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 24158833 - 24158776
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttct 206  Q
    ||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||    
T  24158833 gagtagtgatattttgacaaccatttaggaacaacctttgagacaactttgttgttct 24158776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 44714426 - 44714374
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgtt 201  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  44714426 gagtagtaatattttaacaatcattttggtacaacctttgagacaactttgtt 44714374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 6396510 - 6396452
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||    
T  6396510 gagtagtgatgttttgacaatcattttggtacaacatttgagacaactttgttgttctc 6396452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 37741840 - 37741898
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||| |||||  |||||||||||||||||||||||    
T  37741840 gagtagtgatattttgacaaccattttgatacaatttttgagacaactttgttgttctc 37741898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 8312328 - 8312273
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    ||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||    
T  8312328 gagtagtgatattttgacaaccattttgatataacctctgagacaactttgttgtt 8312273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 43757769 - 43757711
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||| ||||||||| ||  |||||||||||||||||||||||    
T  43757769 gagtagtgatattttgacaactattttggtataatttttgagacaactttgttgttctc 43757711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 11038439 - 11038402
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctt 186  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11038439 gagtagtgatattttaacaaccattttggtacaacctt 11038402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 30596891 - 30596840
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttct 206  Q
    |||||||| |||| | |||||||||||||||||||||||||||| |||||||    
T  30596891 tgatatttgaacagctattttggtacaacctttgagacaactttattgttct 30596840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 145
Target Start/End: Original strand, 9084257 - 9084326
Alignment:
Q  76 agtatctaattttctaggttaggtcgtgtagaggaccttctttgtagttacatgaatcaagtaattcgtt 145  Q
    |||| ||| |||||||||||| ||| ||||||||||||||| ||||| | | ||||||| ||||||||||    
T  9084257 agtacctagttttctaggttatgtcatgtagaggaccttctatgtagctgcttgaatcatgtaattcgtt 9084326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 19427696 - 19427645
Alignment:
Q  151 gtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgt 203  Q
    ||||||||||||||||||| |||||||||||| |||||||| || ||||||||    
T  19427696 gtagtgatattttaacaacaattttggtacaa-ctttgagataattttgttgt 19427645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 21263204 - 21263149
Alignment:
Q  151 gtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttct 206  Q
    |||||||||||| |||||| ||||| ||||||  ||||||||||| ||||||||||    
T  21263204 gtagtgatatttgaacaactatttttgtacaatttttgagacaaccttgttgttct 21263149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 8577396 - 8577448
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||| |||||| ||||||||| ||| |||| |||||| |||||||||||    
T  8577396 tgatatttgaacaactattttggtataacttttgggacaaccttgttgttctc 8577448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 31244629 - 31244681
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||| |||||| ||||||||||||| |||| ||||||  ||||||||||    
T  31244629 tgatatttgaacaactattttggtacaacatttgggacaaccatgttgttctc 31244681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 37947114 - 37947166
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||| |||||| |||||| |||||| |||| |||||| |||||||||||    
T  37947114 tgatatttgaacaactattttgttacaacttttgggacaaccttgttgttctc 37947166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 45405723 - 45405781
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45405723 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttattgttctc 45405781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 5742545 - 5742603
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  5742545 gagtagtgatattttgacaaccattttggtacatcctttgagacaactttgttgttctc 5742603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 32674120 - 32674175
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  32674120 gagtagtgatattttgacaaccattttagtacaacctttgagacaactttgttgtt 32674175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 28156386 - 28156328
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  28156386 gagtagtgatattttgacaactattttagtacaacctttgagacaactttgttgttctc 28156328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 38939082 - 38939138
Alignment:
Q  151 gtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||| ||||||||||||||||||  ||||||| |||||||||||||||    
T  38939082 gtagtgatattttgacaaccattttggtacaatttttgagataactttgttgttctc 38939138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 42651097 - 42651045
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||| |||||| ||||||||||||| ||||||||||| |||||||||||    
T  42651097 tgatatttgaacaactattttggtacaacttttgagacaaccttgttgttctc 42651045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 34578226 - 34578283
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||| ||||||||||||||| ||||||||| ||  |||| ||||||||||||||||||    
T  34578226 agtaatgatattttaacaactattttggtataatttttgggacaactttgttgttctc 34578283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 33635763 - 33635700
Alignment:
Q  144 tttaggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||| |||| |||||||||| |||||||||||  ||||| |||||||| |||||| ||||||||    
T  33635763 tttaagagtggtgatattttgacaaccattttaatacaatctttgagataactttattgttctc 33635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 18550162 - 18550108
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgt 203  Q
    ||||| |||||||| |||||| ||||||||||||| |||| |||||| |||||||    
T  18550162 gagtaatgatatttgaacaactattttggtacaacttttgggacaaccttgttgt 18550108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 25430829 - 25430775
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgt 203  Q
    |||||||||||||| ||||||  |||||||||||| |||| |||||| |||||||    
T  25430829 gagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgt 25430775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 34883346 - 34883289
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||| |||||||| |||||| ||||| ||||||| ||||| ||||| |||||||||||    
T  34883346 agtaatgatatttaaacaactattttagtacaacttttgatacaaccttgttgttctc 34883289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 2600422 - 2600480
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2600422 gagtagtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctc 2600480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 37970116 - 37970058
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37970116 gagtagtgatattttaacaaccattttggtacaacatttgagacaactttgttgttctc 37970058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 384734 - 384676
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||| || ||||||| |||||||||||||||||||||||| |||||    
T  384734 gagtagtgatattttaaaaatcattttgatacaacctttgagacaactttgttattctc 384676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 640575 - 640517
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  640575 gagtagtgatattttgacaatcattttggtataatctttgagacaactttgttgttctc 640517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 28548127 - 28548181
Alignment:
Q  153 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  28548127 agtgatattttaacaaccattttagtacaatctttgagacaactttattgttctc 28548181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 27943140 - 27943088
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgtt 201  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||| ||||||    
T  27943140 gagtagtgatattttaacaatcattttggtacaatctttgagacaattttgtt 27943088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 41458794 - 41458846
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  41458794 tgatattttgacaatcattttggtacaacttttgagacaactttgttgttctc 41458846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 36108354 - 36108300
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  36108354 gagtagtgatattttaacaactattttggtac-acctttgagacaactttattgtt 36108300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 47379740 - 47379685
Alignment:
Q  152 tagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||    
T  47379740 tagtgatattttgacaactattttggtgcaacttttgagacaactttgttgttctc 47379685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 11070411 - 11070353
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||| |||||||||| || |||||||||||||||||| |||||    
T  11070411 gagtagtgatattttgacaatcattttggtagaatctttgagacaactttgttcttctc 11070353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 32747415 - 32747370
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaa 194  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||||||    
T  32747415 gagtattgatattttgacaaccattttggtataacctttgagacaa 32747370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 23034201 - 23034255
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgt 203  Q
    |||||||||||||| ||||||  |||||||||||| |||| |||||| |||||||    
T  23034201 gagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgt 23034255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 27383814 - 27383848
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaac 183  Q
    ||||||| |||||||||||||||||||||||||||    
T  27383814 gagtagtaatattttaacaaccattttggtacaac 27383848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 33341012 - 33341068
Alignment:
Q  149 gagtagtgatatttta-acaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    |||||||||||||||  ||||| ||||||||| ||  ||||||||||||||||||||    
T  33341012 gagtagtgatatttttgacaactattttggtataatgtttgagacaactttgttgtt 33341068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 3518366 - 3518308
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3518366 gagtagtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctc 3518308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 35358823 - 35358881
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35358823 gagtagtgatattttagcaaccattttggtacaacctttgagacaactttgttgttctc 35358881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 8761827 - 8761772
Alignment:
Q  152 tagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8761827 tagtgatatgttaacaaccattttggtacaacctttgagacaactttgttgttctc 8761772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 10469835 - 10469893
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  10469835 gagtagtgatattttgacaatcattttggtacaatctttgagacaactttgttgttctc 10469893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 29766014 - 29765956
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  29766014 gagtagtgatattttgacaactattttggtacaacctttgagataactttgttgttctc 29765956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 1108185 - 1108140
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaa 194  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  1108185 gagtagtgatattttgacaaccattttggtacaacctttgagacaa 1108140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 12612906 - 12612963
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||| |||||||| |||||||||||||||||||| |||| |||||| |||||||||||    
T  12612906 agtaatgatatttgaacaaccattttggtacaacttttgggacaaccttgttgttctc 12612963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 31625965 - 31626022
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||| ||||||||||| ||||||| ||| |||||||||| ||||||||    
T  31625965 agtagtgatattttgacaaccattttagtacaacttttaagacaactttattgttctc 31626022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 34698956 - 34698904
Alignment:
Q  151 gtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    |||||||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  34698956 gtagtgatattttaacaatcattttggtacaa-ctttgaaacaactttgttgtt 34698904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 5005277 - 5005238
Alignment:
Q  168 accattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  5005277 accattttggtacaacttttgagacaactttgttgttctc 5005238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 37821029 - 37821083
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgt 203  Q
    |||||||||||||| |||||| ||||||||||||| |||| |||||| |||||||    
T  37821029 gagtagtgatatttgaacaactattttggtacaacttttgggacaaccttgttgt 37821083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 17574112 - 17574169
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttct 206  Q
    ||||| |||||||| |||||| ||||||||||||| |||| |||||| ||||||||||    
T  17574112 gagtaatgatatttgaacaactattttggtacaacttttgggacaaccttgttgttct 17574169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 35616688 - 35616747
Alignment:
Q  148 ggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||| ||||||||| ||  |||| |||||| |||||||||||    
T  35616688 ggagtagtgatatttgaacaactattttggtataaattttgggacaaccttgttgttctc 35616747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 43152954 - 43153006
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||| |||||| |||||||||||||  ||  ||||||||||||||||||    
T  43152954 tgatatttgaacaactattttggtacaactcttaggacaactttgttgttctc 43153006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 26442276 - 26442334
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26442276 gagtagtgatattttaacaacaattttggtacaacctttgagacaactttgttgttctc 26442334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 1987601 - 1987659
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  1987601 gagtagtgatattttgacaatcattttggtacaacctttgagacaactttgttgttctc 1987659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 30250186 - 30250244
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  30250186 gagtagtgatattttaaaaatcattttggtacaacctttgagacaactttgttgttctc 30250244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 46309011 - 46309069
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  46309011 gagtagtgatattttgacaaccattttggtacaacctttgagacaactttgtagttctc 46309069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 34538110 - 34538056
Alignment:
Q  152 tagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttct 206  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  34538110 tagtgatattttgacaactattttggtacaacctttgagacaactttgttgttct 34538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 46686408 - 46686356
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgtt 201  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  46686408 gagtagtgatattttgacaaccattttggtacaacctttgatacaactttgtt 46686356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 55960888 - 55960828
Alignment:
Q  144 tttaggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||    
T  55960888 tttaagagtagtgatattttaacaaccattttgatacaatctttgagacaacgttgttgtt 55960828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 9827874 - 9827928
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||||||||||    
T  9827874 agtagtgatattttgacaatcattttggtataacctttgagacaactttgttgtt 9827928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 37732132 - 37732074
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||    
T  37732132 gagtagtgatattttaacaaccatttcggtacaatctttgaaacaactttattgttctc 37732074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 4949122 - 4949179
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttct 206  Q
    ||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  4949122 gagtaatgatattttgataaccattttggtacaacttttgagacaactttgttgttct 4949179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 6093495 - 6093551
Alignment:
Q  151 gtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||||    
T  6093495 gtagtgatattttaacaactattttggtataatctttgagacaattttgttgttctc 6093551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 45418245 - 45418197
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaacttt 198  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  45418245 gagtagtgatattttaacgaccattttggtac-acctttgagacaacttt 45418197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 35037770 - 35037718
Alignment:
Q  144 tttaggagtagtgatattttaacaaccattttggtacaacctttgagacaact 196  Q
    |||| ||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  35037770 tttaagagtagtgatattttgacaatcattttagtacaacctttgagacaact 35037718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 36946980 - 36947038
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||| || ||  ||||||| || ||||||||||||    
T  36946980 gagtagtgatattttgacaaccattttgatataatttttgagataattttgttgttctc 36947038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 45678446 - 45678388
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| |||||||| |||||| ||||||||||||| ||||  ||||| |||||||||||    
T  45678446 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctc 45678388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 29863728 - 29863676
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||| |||||  ||||||||||||| ||||||||||| |||||| ||||    
T  29863728 tgatatttgaacaattattttggtacaacttttgagacaacattgttgctctc 29863676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 46799932 - 46799880
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||| ||||| |||||||||||||  |||| |||||| |||||||||||    
T  46799932 tgatatttgaacaatcattttggtacaatttttgggacaaccttgttgttctc 46799880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 38724205 - 38724263
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38724205 gagtagtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctc 38724263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 40721954 - 40721896
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40721954 gagtagtgatattttgacaaccattttggtacaacctttgagacaactttgttgttctc 40721896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 1151712 - 1151654
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  1151712 gagtagtgatattttgacaactattttggtacaacctttgagacaactttgttgttctc 1151654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 24727585 - 24727527
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  24727585 gagtagtgatattttgacaaccattttggtacaacctttgagacaactttattgttctc 24727527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 34373191 - 34373133
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  34373191 gagtagtgatattttgacaaccattttggtataacctttgagacaactttgttgttctc 34373133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 43026119 - 43026061
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  43026119 gagtagtgatattttgacaatcattttggtacaacctttgagacaactttgttgttctc 43026061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 9377647 - 9377704
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9377647 agtaatgatattttaacaaccattttggtataacctttgagacaactttgttgttctc 9377704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 304880 - 304936
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttc 205  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  304880 gagttgtgatattttaacaaccattttgatacaacctttgagacaactttgttgttc 304936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 27328997 - 27329055
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  27328997 gagtagtgatattttaacaacaattttggtacatcttttgagacaactttgttgttctc 27329055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 4858295 - 4858238
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||    
T  4858295 agtagtgatattttgacaatcattttggtacaacctttgagacaattttgttgttctc 4858238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 11728009 - 11728064
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  11728009 gagtagtgatattttaacaatcattttggtacaatctttaagacaactttgttgtt 11728064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 25094530 - 25094477
Alignment:
Q  154 gtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  25094530 gtgatattttgacaaccattttagtacaatctttgagacaactttgttgttctc 25094477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 37827677 - 37827731
Alignment:
Q  153 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||||  |||||||||||| |||| |||||||||||||||||||    
T  37827677 agtgatattttaacaattattttggtacaatctttaagacaactttgttgttctc 37827731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 23141539 - 23141479
Alignment:
Q  147 aggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||| ||||||  |||||||||||| |||| |||||| |||||||||||    
T  23141539 aggagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctc 23141479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 23553329 - 23553269
Alignment:
Q  147 aggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||| ||||||  |||||||||||| |||| |||||| |||||||||||    
T  23553329 aggagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctc 23553269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 30340179 - 30340119
Alignment:
Q  147 aggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||| ||||||  |||||||||||| |||| |||||| |||||||||||    
T  30340179 aggagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgttctc 30340119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 13850076 - 13850130
Alignment:
Q  153 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||| ||||| ||||||||| ||| |||||||||| ||||||||||||    
T  13850076 agtgatattttgacaactattttggtataacttttgagacaattttgttgttctc 13850130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 35518458 - 35518400
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| |||||||| |||||| |||||| |||||| |||| ||||||||||||||||||    
T  35518458 gagtaatgatatttgaacaactattttgatacaacttttgggacaactttgttgttctc 35518400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 8757727 - 8757669
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| |||||||| |||||| ||||||||||||| ||||  ||||| |||||||||||    
T  8757727 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctc 8757669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 33569747 - 33569693
Alignment:
Q  153 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||| ||||| ||||||  |||||||||||| ||||||||||||||||| |||||    
T  33569747 agtgttatttgaacaactcttttggtacaacttttgagacaactttgttattctc 33569693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 34141626 - 34141572
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgt 203  Q
    |||||||||||||| ||||||  |||||||||||| ||||  |||||||||||||    
T  34141626 gagtagtgatatttgaacaactcttttggtacaacttttggaacaactttgttgt 34141572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 2280360 - 2280302
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  2280360 gagtagtgatattttgacaaccattttggtacaatctttgagacaactttgttgttctc 2280302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 50025573 - 50025631
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50025573 gagtaatgatattttcacaaccattttggtacaacctttgagacaactttgttgttctc 50025631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 14847406 - 14847463
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttct 206  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  14847406 gagtagtgatattttgacaaccattttggtacaaccttttagacaactttgttgttct 14847463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 16295650 - 16295589
Alignment:
Q  146 taggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  16295650 taggagtagtgatattttgacaactattttggtacaacttttgagacaactttgttgttctc 16295589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 29533943 - 29533886
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  29533943 agtagtgatattttgacaatcattttggtacaacttttgagacaactttgttgttctc 29533886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 33075054 - 33074998
Alignment:
Q  151 gtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  33075054 gtagtgatattttgacaactattttagtacaacctttgagacaactttgttgttctc 33074998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 10565230 - 10565177
Alignment:
Q  153 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  10565230 agtgatattttaacaaccattttggtac-acctttgagacaactttattgttctc 10565177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 38471825 - 38471767
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||  |||||||||||| ||||||||||||||||||||||||    
T  38471825 gagtagtgatattttgacaattattttggtacaatctttgagacaactttgttgttctc 38471767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 47140569 - 47140621
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||| | ||||||||||||||||| |||||||||||||||||||||||    
T  47140569 tgatattttgagaaccattttggtacaacttttgagacaactttgttgttctc 47140621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 3210564 - 3210606
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgaga 191  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  3210564 gagtagtgatattttaactaccattttggtacaacctttgaga 3210606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 9557820 - 9557878
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| ||||  ||||||||||||| |||||||||| ||||||||||||    
T  9557820 gagtagtgatattttgacaattattttggtacaacttttgagacaattttgttgttctc 9557878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 25806413 - 25806470
Alignment:
Q  150 agtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||| |||||||||||| |||||||||||||||||| | |||| ||||||||||||    
T  25806413 agtagtaatattttaacaatcattttggtacaaccttttaaacaattttgttgttctc 25806470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 25559883 - 25559829
Alignment:
Q  153 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||| || ||||||| ||||||||||||||||| ||| ||||||||    
T  25559883 agtgatattttaagaatcattttgatacaacctttgagacaattttattgttctc 25559829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 33972066 - 33972008
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| |||||||| |||||| ||||||||||||  ||||||||||| |||||||||||    
T  33972066 gagtaatgatatttgaacaactattttggtacaatttttgagacaaccttgttgttctc 33972008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 1261263 - 1261318
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    ||||||||||||||| |||||||| ||| |||||  ||| ||||||||||||||||    
T  1261263 gagtagtgatattttgacaaccatgttgatacaattttttagacaactttgttgtt 1261318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 27276917 - 27276862
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    ||||| |||||||| |||||| ||||||||||||  ||||||||||| ||||||||    
T  27276917 gagtaatgatatttgaacaactattttggtacaatttttgagacaaccttgttgtt 27276862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 29555724 - 29555783
Alignment:
Q  144 tttaggagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgt 203  Q
    |||| |||||||||||||| ||||||  |||||||||||| |||| |||||| |||||||    
T  29555724 tttatgagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgt 29555783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 36301098 - 36301154
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||||||| |||| |||||||||  ||| ||||||| |||||||||||||||    
T  36301098 gagtagtgatattttgacaatcattttggt--aacatttgagataactttgttgttctc 36301154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 52383182 - 52383135
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaact 196  Q
    ||||||||||||||| ||||| |||||||||||| |||||||| ||||    
T  52383182 gagtagtgatattttgacaactattttggtacaatctttgagataact 52383135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 9027796 - 9027738
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| |||||||| |||||| ||||||||||||| ||||  ||||| |||||||||||    
T  9027796 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctc 9027738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 31763990 - 31763932
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| |||||||| |||||| ||||||||||||  |||| ||||| ||||||||||||    
T  31763990 gagtaatgatatttaaacaactattttggtacaatttttgggacaattttgttgttctc 31763932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 42643416 - 42643362
Alignment:
Q  153 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||| |||||||||||| || ||  |||||||||| ||||||||||||    
T  42643416 agtgatattttgacaaccattttgatataatttttgagacaattttgttgttctc 42643362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 43149231 - 43149289
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| |||||||| |||||| ||||||||||||| ||||  ||||| |||||||||||    
T  43149231 gagtaatgatatttgaacaactattttggtacaacttttggtacaaccttgttgttctc 43149289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 52381286 - 52381248
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaaccttt 187  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  52381286 gagtagtgatattttgacaaccattttagtacaaccttt 52381248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 884717 - 884665
Alignment:
Q  152 tagtgatattttaacaaccattttggtacaacctttgagacaactttgttgtt 204  Q
    |||||||||||||||||| ||||||||| ||  ||||||| || |||||||||    
T  884717 tagtgatattttaacaactattttggtataatttttgagagaattttgttgtt 884665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 34976799 - 34976741
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  34976799 gagtagtgatattttgtcaaccattttggtacaacctttgagataactttgttgttctc 34976741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 3335350 - 3335404
Alignment:
Q  153 agtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||||||| ||| |||||||| |||||  |||||||||||||||||||||||    
T  3335350 agtgatattttgacagccattttgatacaatatttgagacaactttgttgttctc 3335404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 22422333 - 22422275
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||| |||||||| |||||  ||||||||||||| ||||  |||||||||||||||||    
T  22422333 gagtaatgatatttgaacaattattttggtacaacttttggtacaactttgttgttctc 22422275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 176
Target Start/End: Complemental strand, 12737421 - 12737392
Alignment:
Q  147 aggagtagtgatattttaacaaccattttg 176  Q
    ||||||||||||||||||||||||||||||    
T  12737421 aggagtagtgatattttaacaaccattttg 12737392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 35050354 - 35050297
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttct 206  Q
    |||||||| |||||| ||||| ||||||||| ||| ||||||| || |||||||||||    
T  35050354 gagtagtggtattttgacaactattttggtaaaacttttgagataattttgttgttct 35050297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 608555 - 608607
Alignment:
Q  155 tgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||| |||||| |||||||||||||  ||| |||||| |||||||||||    
T  608555 tgatatttgaacaactattttggtacaactgttgggacaaccttgttgttctc 608607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 54553 - 54608
Alignment:
Q  152 tagtgatattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  54553 tagtgatattttgacaactattttggtacaatctttgagacaactttgttgttctc 54608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 1085 - 1035
Alignment:
Q  157 atattttaacaaccattttggtacaacctttgagacaactttgttgttctc 207  Q
    ||||||| ||||| ||||||||||||| ||||||| |||||||||||||||    
T  1085 atattttgacaactattttggtacaacttttgagataactttgttgttctc 1035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 145230 - 145176
Alignment:
Q  149 gagtagtgatattttaacaaccattttggtacaacctttgagacaactttgttgt 203  Q
    |||||||||||||| ||||||  |||||||||||| |||| |||||| |||||||    
T  145230 gagtagtgatatttgaacaactcttttggtacaacttttgggacaaccttgttgt 145176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University