View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_low_5 (Length: 467)
Name: NF4063_low_5
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 38359486 - 38359952
Alignment:
| Q |
1 |
attcctggtgtagagagcctttgacaattgcacttaacattcccccatcttcatagtcatttacaagctactcttgatacttgcattcataattttaagt |
100 |
Q |
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| T |
38359486 |
attcctggtgtagagagcctttgacaactgcacttaacattcccccatcttcatagtcatttacaagctactcttgatacttgcattcataattttaagt |
38359585 |
T |
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| Q |
101 |
ggagtgtctcctaagaaatcttagttgtttgcccagttttggaacagaagttgaaacttttgtccattcctaattcttacaaggaagataagctgatttg |
200 |
Q |
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| T |
38359586 |
ggagtgtctcctaagaaatcttagtcgtttgcctagttttggaacagaagttgaaacttttgtccattcctaattcttacaaggaagataagctgatttg |
38359685 |
T |
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| Q |
201 |
gaagtcatctcatgatggaagtctctcctttaaagatgcatatcgttttcatacttcccctcatcctcaaaacattagttgcgctgaaactatttggcat |
300 |
Q |
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| T |
38359686 |
gaagccatctcatgatggaagtctctcctttaaagatgcatatcgttttcatacttcccctcatcctcaaaacattagttgggctaaaactatttgtaat |
38359785 |
T |
|
| Q |
301 |
gctactattgcccccctccaagcctcttcttgtttggaggattcttctcaacaagctccccacagatgacattcttgcgaaaagaggttgtttgcttccc |
400 |
Q |
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| T |
38359786 |
gctgctattgtccccctccaagcctcttcttgtttggaggattcttctcaacaagctccccacagatgacattcttgcgaaaagaggttgtttgcttccc |
38359885 |
T |
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| Q |
401 |
tctatttgttctctttgtggaaaaatcaagaaactcaatctcacatgttccttgaatgcactttctc |
467 |
Q |
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| T |
38359886 |
tctattttttctctttgtggaaaaatcaagaaactcaatctcacatgttccgtgaatgcactttctc |
38359952 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 18526081 - 18525907
Alignment:
| Q |
67 |
gctactcttgatacttgcattcataattttaagtggagtgtctcctaagaaatcttagttgtttgcccagttttggaacagaagttgaaacttttgtcca |
166 |
Q |
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|||||||||||| ||| ||||| ||||||| | || ||||| | ||||||||||| ||| ||||||| || | | || || ||||| | |||| | |
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| T |
18526081 |
gctactcttgattcttatattcacaattttaggcggcgtgtccctcaagaaatcttaattgcttgcccaattcttcagcaaaaattgaagttggtgtcaa |
18525982 |
T |
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| Q |
167 |
ttcctaattcttacaaggaagataagctgatttggaagtcatctcatgatggaagtctctcctttaaagatgcat |
241 |
Q |
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| T |
18525981 |
ttcctaacacttacaaggaggataagcttatttggaagcaatctcatgatggtaacctatcatttaaagatgcat |
18525907 |
T |
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