View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_low_7 (Length: 438)
Name: NF4063_low_7
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 2 - 421
Target Start/End: Complemental strand, 8361955 - 8361548
Alignment:
| Q |
2 |
aataaagcagaaaaggatggacctccaaacatatcattgcatgcattttatgtaattgataatgctaagaaagcattggaagcagtttgtccaggggtcg |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8361955 |
aataaagcagaaaaggatggacctccaaacatatcattgcatgcattttatgtaattgataatgctaagaaagcattggaagcagtttgtccaggggtcg |
8361856 |
T |
|
| Q |
102 |
tgtcttgtgctgatatcttggctcttgctgctagggacgctgtcactctggtaagtcacaatcacaaatgatgatatgaattttatgataatttaaaggt |
201 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
8361855 |
tgtcttgtgctgatattttggctcttgctgctagagacgctgtcactctggtaagtcacaatcacaaatgatgatatgaattata--ataatttaaaggt |
8361758 |
T |
|
| Q |
202 |
tacgttgcagtaacaattaa---tacattttttgagtgtcatatatgtcattaattagtccggagggccaaattgggaagtaccaaaaggaagaaaggat |
298 |
Q |
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| T |
8361757 |
t-----gcagtaacaaataacaatacattttttgagtgtc----atgtc----attagtccggagggccaaattgggaagtaccaaaaggaagaaaggat |
8361671 |
T |
|
| Q |
299 |
ggtataatctcaaaggctactgaaacgagacaattgccagctcccactttcaacatctcccaattacaacaaagcttctctcaaagaggactttccttgc |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8361670 |
ggtataatctcaaaggctactgaaacgagacaattgccagctcccactttcaacatctcccaattacaacaaagcttctctcaaagaggactttccttgc |
8361571 |
T |
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| Q |
399 |
aagatctcgttgccctctcaggt |
421 |
Q |
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| T |
8361570 |
aagatctcgttgccctctcaggt |
8361548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 9058670 - 9058591
Alignment:
| Q |
5 |
aaagcagaaaaggatggacctccaaacatatcattgcatgcattttatgtaattgataatgctaagaaagcattggaagc |
84 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||| | || ||||||||||| ||||| |
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| T |
9058670 |
aaagcagaaaaggatggaccgccaaacatttcattgcatgcattctatgtcattgatgaagcaaagaaagcattagaagc |
9058591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 31748067 - 31748206
Alignment:
| Q |
5 |
aaagcagaaaaggatggacctccaaacatatcattgcatgcattttatgtaattgataatgctaagaaagcattggaagcagtttgtccaggggtcgtgt |
104 |
Q |
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||||||||||| |||||||| ||||| ||| ||||||||||| | | | ||||||||||| ||||||||||| ||||| | ||| || || || || | |
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| T |
31748067 |
aaagcagaaaaagatggaccaccaaatgcatctttgcatgcattctttatcattgataatgcaaagaaagcattagaagctgcttgccctggtgtagtct |
31748166 |
T |
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| Q |
105 |
cttgtgctgatatcttggctcttgctgctagggacgctgt |
144 |
Q |
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|||||||||||||||| ||| |||| || ||||| ||||| |
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| T |
31748167 |
cttgtgctgatatcttagcttttgcagcaagggatgctgt |
31748206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 37111313 - 37111348
Alignment:
| Q |
98 |
gtcgtgtcttgtgctgatatcttggctcttgctgct |
133 |
Q |
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| T |
37111313 |
gtcgtgtcttgtgctgatattttggctcttgctgct |
37111348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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