View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4063_low_8 (Length: 417)
Name: NF4063_low_8
Description: NF4063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4063_low_8 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: scaffold0135 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 36825 - 37215
Alignment:
| Q |
17 |
catttttcattctgtgtcttgtttctagttttaaattctaatagtttttaacatttgcttggtttctgtggatcagttgagttgaagaaaaatatctcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36825 |
catttttcattctgtgtcttgtttctagttttaaattctaatagtttttaacatttgcttggtttctgtggatcagttgagttgaagaaaaatatctcat |
36924 |
T |
|
| Q |
117 |
gctctttgcagttgtggaacaagtcagataattatttggctttcaaggtaatgattttcattttcgtttgttagaaaatgataacttgtgcatttaaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36925 |
gctctttgcagttgtggaacaagtcagataattatttggctttcaaggtaatgattttcattttcgtttgttagaaaatgataacttgtgcatttaaaaa |
37024 |
T |
|
| Q |
217 |
ataagttaagaaactaaatatagaagtatttattgaaaatggggtatcttnnnnnnnnnnnnnnnnnnnnnttttattagtaaacttatcctttaattc- |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37025 |
ataagttaagaaactaaatatagaagtatttattgaaaatggggtatcttaaaaattaaaaaaattaaaaattttattagtaaacttatcctttaattct |
37124 |
T |
|
| Q |
316 |
nnnnnnnagcttcttaagattaccttgtttgtattataaattgagtattgataaggaaaaattgtaattttgatttggattgaaattgatg |
406 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37125 |
tttttttagcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatg |
37215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 406
Target Start/End: Original strand, 9230959 - 9231349
Alignment:
| Q |
17 |
catttttcattctgtgtcttgtttctagttttaaattctaatagtttttaacatttgcttggtttctgtggatcagttgagttgaagaaaaatatctcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9230959 |
catttttcattctgtgtcttgtttctagttttaaattctaatagtttttaacatttgcttggtttctgtggatcagttgagttgaagaaaaatatctcat |
9231058 |
T |
|
| Q |
117 |
gctctttgcagttgtggaacaagtcagataattatttggctttcaaggtaatgattttcattttcgtttgttagaaaatgataacttgtgcatttaaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9231059 |
gctctttgcagttgtggaacaagtcagataattatttggctttcaaggtaatgattttcattttcgtttgttagaaaatgataacttgtgcatttaaaaa |
9231158 |
T |
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| Q |
217 |
ataagttaagaaactaaatatagaagtatttattgaaaatggggtatcttnnnnnnnnnnnnnnnnnnnnnttttattagtaaacttatcctttaattc- |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9231159 |
ataagttaagaaactaaatatagaagtatttattgaaaatggggtatcttaaaaattaaaaaaattaaaaattttattagtaaacttatcctttaattct |
9231258 |
T |
|
| Q |
316 |
nnnnnnnagcttcttaagattaccttgtttgtattataaattgagtattgataaggaaaaattgtaattttgatttggattgaaattgatg |
406 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9231259 |
tttttttagcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatg |
9231349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 9169369 - 9169180
Alignment:
| Q |
29 |
tgtgtcttgtttctagttttaaattctaatagt-------ttttaacatttgcttggtttctgtggatcagttgagttgaagaaaaatatctcatgctct |
121 |
Q |
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||||||||||||||| || |||||||||||||| |||||||| || ||| |||||||| | ||||||| |||||||||||||||||||| | | |
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| T |
9169369 |
tgtgtcttgtttctatttctaaattctaatagtataatttttttaacactttctttatttctgtgaaccagttgaattgaagaaaaatatctcatgttgt |
9169270 |
T |
|
| Q |
122 |
ttgcagttgtggaacaagtcagataattatttggctttcaaggtaatgattttcattttcgtttgttagaaaatgataacttgtgcattt |
211 |
Q |
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| T |
9169269 |
ttgcagttgtccaacaagtcagataattatttggctttcaaggtaatgattttctttttcgtttgttagaaaatgataagttgtgcattt |
9169180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 9256161 - 9256311
Alignment:
| Q |
61 |
tttttaacatttgcttggtttctgtggatcagttgagttgaagaaaaatatctcatgctctttgcagttgtggaacaagtcagataattatttggctttc |
160 |
Q |
| |
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||||||||| || |||| |||||| | | ||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
9256161 |
tttttaacactttcttgttttctgcgaaccagttgaattgaagaaaaatatctcatgctgtttgcagttgtccaacaagtcagataattatttggctttc |
9256260 |
T |
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| Q |
161 |
aaggtaatgattttcattttcgtttgttagaaaatgataacttgtgcattt |
211 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
9256261 |
aaggtaatgattttctttttcgtttgttagaaaatgataagttgtgcattt |
9256311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 90 - 211
Target Start/End: Original strand, 9172914 - 9173038
Alignment:
| Q |
90 |
cagttgagttgaagaaaaatatctcatgctctttgcagttgtggaacaagtcagataa---ttatttggctttcaaggtaatgattttcattttcgtttg |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
9172914 |
cagttgagttgaagaaaaatatctcatgctctttgcagttgtctaactagtcagataataattatttggctttcaaggtaatgattttctttttcgtttg |
9173013 |
T |
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| Q |
187 |
ttagaaaatgataacttgtgcattt |
211 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
9173014 |
ttagaaaatgataagttgtgcattt |
9173038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 9310211 - 9310156
Alignment:
| Q |
110 |
atctcatgctctttgcagttgtggaacaagtcagataattatttggctttcaaggt |
165 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| | ||||||||||| |
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| T |
9310211 |
atctcatgctctttgcagttgtctaacaagtcagataattatatagctttcaaggt |
9310156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 9266994 - 9267106
Alignment:
| Q |
60 |
gtttttaacatttgcttggtttctgtggat-cagttgagttgaagaaaaatatctcatgctctttgcagttgtggaacaagtcagataattatttggctt |
158 |
Q |
| |
|
|||||||||| || |||||||| |||| | ||||||| ||||| ||| | |||| || |||||| ||| ||| |||||||| ||||||||| |||||| |
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| T |
9266994 |
gtttttaacactttcttggtttttgtgaacacagttgaattgaataaacagatcttatcctctttccagatgtctaacaagtctgataattatctggctt |
9267093 |
T |
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| Q |
159 |
tcaaggtaatgat |
171 |
Q |
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|||||||| |||| |
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| T |
9267094 |
tcaaggtattgat |
9267106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 9155221 - 9155332
Alignment:
| Q |
61 |
tttttaacatttgcttggtttctgtggat-cagttgagttgaagaaaaatatctcatgctctttgcagttgtggaacaagtcagataattatttggcttt |
159 |
Q |
| |
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||||||||| || |||||||| |||| | ||||||| ||||| ||| | |||||| |||||| ||| ||| |||||||| ||||||||| ||||||| |
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| T |
9155221 |
tttttaacactttcttggtttttgtgaacacagttgaattgaaaaaacagatctcaatctctttccagatgtctaacaagtctgataattatctggcttt |
9155320 |
T |
|
| Q |
160 |
caaggtaatgat |
171 |
Q |
| |
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||||||| |||| |
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| T |
9155321 |
caaggtattgat |
9155332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 9169017 - 9168962
Alignment:
| Q |
351 |
ataaattgagtattgataaggaaaaattgtaattttgatttggattgaaattgatg |
406 |
Q |
| |
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||||||||||| || | ||||||| ||||||||||||||||||||||||||||| |
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| T |
9169017 |
ataaattgagtgttatttaggaaaagctgtaattttgatttggattgaaattgatg |
9168962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 12454004 - 12453976
Alignment:
| Q |
219 |
aagttaagaaactaaatatagaagtattt |
247 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12454004 |
aagttaagaaactaaatatagaagtattt |
12453976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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