View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4064_high_10 (Length: 401)
Name: NF4064_high_10
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_high_10 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 48319763 - 48320147
Alignment:
| Q |
17 |
aagatatatatcagaaacatgggcattaatttcatattcattaattttggccatatatatgattaattaaaaactaaccatcactgtgtatgatttctct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48319763 |
aagatatatatcagaaacatgggcattaatttcatattcattaattttggccatatatatgattaattaaaaactaaccatcagtgtgtatgatttctct |
48319862 |
T |
|
| Q |
117 |
gagaacttgacaacaactgcaaaaatacggggttactgtgggtggccattgattaagtgctcgcagttcggtttggttcaacaaaaccggaatctgaatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48319863 |
gagaacttgacaacaactgcaaaaatacggggttactgtgggtggccattgattaagtgctcgcagttcggtttggttcaacaaaatgggaatctgaatt |
48319962 |
T |
|
| Q |
217 |
tcaggtatactctgttgttgattctcatacattcttgatgaactatcacccacttcaaggctatttcttccaaatgaaaaattattactgttttgatcat |
316 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48319963 |
tcaggtatactttgttgttgattctcatatattcttgatgaactatcacccacttcaaggctatttcttccaaatgaaaaattaatactgttttgatcat |
48320062 |
T |
|
| Q |
317 |
attgatcttgaaccattggaacagaaaatgtttcatttgtactaccatttccatgttgttgtaacataacatccgaaaatgaatc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48320063 |
attgatcttgaaccattggaacagaaaatgtttcatttgtactaccatttccatgttgttgtaacataacatccgaaaatgaatc |
48320147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 374
Target Start/End: Complemental strand, 26326027 - 26325883
Alignment:
| Q |
227 |
tctgttgttgattctcatacattcttgatgaactatcacccacttcaaggctatttcttccaaatgaaaaattattactgttttgatcatattgatcttg |
326 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||| ||| |||||| | |||| |||||||||||| ||||||| | ||| || ||||| ||| |
|
|
| T |
26326027 |
tctgttgttgattctcattcgttcgtgatgaacta---cccgcttcaaagttattcattccaaatgaaacattattatttggctgaccaagttgattttg |
26325931 |
T |
|
| Q |
327 |
aaccattggaacagaaaatgtttcatttgtactaccatttccatgttg |
374 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
26325930 |
aaccattggaagagaaaatgtttcattagtagtaccatgtccatgttg |
26325883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University