View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4064_high_18 (Length: 304)

Name: NF4064_high_18

Description: NF4064

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4064_high_18

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 184; E-Value: 1e-99

Query Start/End: Original strand, 18 - 273

Target Start/End: Original strand, 28789925 - 28790179

Alignment:

Q	18	gaaagcctctcaatcatgaaacagataaacataagttgcattcatgcaactgagaaagacatacctagacttgaaaatatttttgatatgaaggattatg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\| \|\|\|\|\| \|
T	28789925	gaaagcctctcaatcatgaaactgataaacataagctgcattcatgcaactgagaaagacatacctagactttaaaatatctgtaatatgaaagattacg	28790024	T

Q	118	gtcatccttaaatgatattttaaaaaatgtaaaccaatccatattttgtacaactcaatttcaatattgaacagcgacaacattaaaagcatgggactaa	217	Q
		\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28790025	gtaatccttaa-tgacattttagaaaatgtaaaccaatcgatattttgtacaactcaattttaatattgaacaacgacaacattaaaagcatgggactaa	28790123	T

Q	218	agaaacaatattcaggcaatagtacataaatactaacacatgatgtgcttgcatca	273	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28790124	agaaacaatattcaagcaatagtacataaatactaactcatgatgtgcttgcatca	28790179	T

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Target: chr3; HSP #2

Raw Score: 32; E-Value: 0.000000007

Query Start/End: Original strand, 142 - 205

Target Start/End: Original strand, 28780707 - 28780770

Alignment:

Q	142	aaatgtaaaccaatccatattttgtacaactcaatttcaatattgaacagcgacaacattaaaa	205	Q
		\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|
T	28780707	aaatgcaaacaagtccatattttgtagaactcaacatcaatattgaacagagacaacactaaaa	28780770	T

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