View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_high_24 (Length: 226)
Name: NF4064_high_24
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 37800087 - 37800282
Alignment:
| Q |
19 |
aatgagtgtacttgtatgagctccattaggaaatggacatcctttgcgtaaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaag |
118 |
Q |
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| T |
37800087 |
aatgagtgtacttgtatgagctccattaggaaatggacatcctttgcataaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaag |
37800186 |
T |
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| Q |
119 |
gattaggattcccaccaatagagaattttgtccttcttatcacttcaacatgctcttttggtgtagccattgatcttctctaactgaaatgaagta |
214 |
Q |
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| T |
37800187 |
gattaggattcccaccaatagagaattttgtccttcttatcacttcaacatgctcttttggtgtagccattgatcttctctaactgaaatgaagta |
37800282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 3008198 - 3008025
Alignment:
| Q |
24 |
gtgtacttgtatgagctccattaggaaatggacatcctttgcgtaaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaaggatta |
123 |
Q |
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| T |
3008198 |
gtgtacttgaatgagttccatgagaaaatgaacatctttggcgtaaagctcggcagagagattcttgactgcatgatggagatcataagtcaatggatta |
3008099 |
T |
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| Q |
124 |
ggattcccaccaatagagaattttgtccttcttatcacttcaacatgctcttttggtgtagccattgatcttct |
197 |
Q |
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| T |
3008098 |
ggtttcccaccaatagaaaacttttctcttcgtatctcttcaatgtgttctttcggtgtacccattgatcttct |
3008025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 2925473 - 2925586
Alignment:
| Q |
24 |
gtgtacttgtatgagctccattaggaaatggacatcctttgcgtaaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaaggatta |
123 |
Q |
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| T |
2925473 |
gtgtacttgaatgagttccatgaggaagtgaacatctttggcgtaaagttccgcaaagagatttttgacagcatgatgaagatcttcagtcaatggatta |
2925572 |
T |
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| Q |
124 |
ggattcccaccaat |
137 |
Q |
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| T |
2925573 |
ggtttcccaccaat |
2925586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 2935317 - 2935449
Alignment:
| Q |
34 |
atgagctccattaggaaatggacatcctttgcgtaaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccac |
133 |
Q |
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| T |
2935317 |
atgagctccattaggaaatgaacatctctggtatatagttcatctgagagattcttgacagcttggtgaaggtcctcagtcaaagggtttggattgccac |
2935416 |
T |
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| Q |
134 |
caatagagaattttgtccttcttatcacttcaa |
166 |
Q |
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| T |
2935417 |
caatggagaactttttccttcgtatctcttcaa |
2935449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 28029338 - 28029525
Alignment:
| Q |
25 |
tgtacttgtatgagctccattaggaaatggacatcctttgcgtaaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattag |
124 |
Q |
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| T |
28029338 |
tgtacttgaatcagttccatcaggaaatgaacatcttttgcataaagctcggcggagagattcttaacggcatgatgaagatcctcagtcaaaggattag |
28029437 |
T |
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| Q |
125 |
gattcccaccaatagagaattttgtccttcttatcacttcaacatgctcttttggtgtagccattgatcttctctaactgaaatgaag |
212 |
Q |
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|||| |||||||||||||| |||||||||| |||| ||||||| || |||||||||||||||||||||||||| |||||| ||||||| |
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| T |
28029438 |
gatttccaccaatagagaactttgtccttcgtatctcttcaacgtgttcttttggtgtagccattgatcttctgtaactgtaatgaag |
28029525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 4911680 - 4911575
Alignment:
| Q |
67 |
taaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaatagagaattttgtccttcttatcacttcaa |
166 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||| ||| ||||||| || || ||||| ||||||||||||||| |||||| |||| |||||| |
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| T |
4911680 |
taaagttcagcagagagattcttaacagcttgatgaagatcttcaatcaaagggtttggtttcccgccaatagagaattttctccttcgtatctcttcaa |
4911581 |
T |
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| Q |
167 |
catgct |
172 |
Q |
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| T |
4911580 |
tatgct |
4911575 |
T |
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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 1502166 - 1502039
Alignment:
| Q |
27 |
tacttgtatgagctccattaggaaatggacatcctttgcgtaaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattagga |
126 |
Q |
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|||||| || |||||||| || ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| | ||| ||||||| ||||||| ||||||| |
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| T |
1502166 |
tacttgaataagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggt |
1502067 |
T |
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| Q |
127 |
ttcccaccaatagagaattttgtccttc |
154 |
Q |
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| T |
1502066 |
tcccctccaatagagaactttgtccttc |
1502039 |
T |
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