View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_high_3 (Length: 603)
Name: NF4064_high_3
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 590
Target Start/End: Original strand, 46736481 - 46737044
Alignment:
| Q |
15 |
cagagattcctagatgctgtccaagtgcattagcaggtataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgac |
114 |
Q |
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| T |
46736481 |
cagagattcctagatgctgtccaagtgcattagcagatataatgaaaagatgctgggacaagaatccagaaaagcgtccggaaatgaaagatgtggtgac |
46736580 |
T |
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| Q |
115 |
aatgttggaagaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataatag |
214 |
Q |
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| T |
46736581 |
aatgttggaaaaaattgatacaagcaaaggaggcggaatgataagagaagaccagactccattttgtttttgttttaaacctgctcgtggcccataataa |
46736680 |
T |
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| Q |
215 |
tcatactcaatttttaatgagtattattatgtacattaagtaagtcattgtcgtttatggaaatatcggagttgttgtctatggaaatatcggaggtatg |
314 |
Q |
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| T |
46736681 |
tcatactcaatttttaatgagtataattatgtacattaagtaagtcattgtcgtctatggaaatatcggagttgttgtctatggaaatatcggaggtatg |
46736780 |
T |
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| Q |
315 |
ttgcagccttcaactgtcatttgttggcttgcttgtcaatttactagttgacttcatatatattctatattagatattgaaaaagatattgaactagtat |
414 |
Q |
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| T |
46736781 |
ttgcagccttcaactgtcatttgttggcttgcttgtcaatttactggttgacttcatatatattttatatt------------agatattgaactagtat |
46736868 |
T |
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| Q |
415 |
tgtgttgcttgctggtattgtgagtcattgatttatgggatactcaatgtgtcgtctatgcattcatgactcatgagcattgatatctcttgttttgttg |
514 |
Q |
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| T |
46736869 |
tgtgttgcttgctggtattgtgagtcattgatttatgggatactcaatgtgtcgtctatgcattcatgactcatgagcattgatatctcttgttttgttg |
46736968 |
T |
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| Q |
515 |
tttgagagattggatgtgtgctatgggataaaaggagcaattgttttttgaacagaacgtggatgaatgctatatc |
590 |
Q |
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| T |
46736969 |
tttgagagattggatgtgtgctatgggataaaaggagcaattgttttttgaacagaacgtggatgaatgctatatc |
46737044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 986195 - 986262
Alignment:
| Q |
89 |
cgtccggaaatgaaagatgtggtgacaatgttggaagaaattgatacaagcaaaggaggcggaatgat |
156 |
Q |
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| T |
986195 |
cgtccggaaatgaaggatgtggtgataatgctagaagcactggatacaagcaaaggtggtggaatgat |
986262 |
T |
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