View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_1 (Length: 1011)
Name: NF4064_low_1
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 1e-62; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 218 - 360
Target Start/End: Original strand, 27732836 - 27732978
Alignment:
| Q |
218 |
gtattttaataatttaataatatcatgtacaaaagcttacctgcatttttaatttcttgtccaataggtacatccagatatgatccaataagtaaagagc |
317 |
Q |
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| T |
27732836 |
gtattttaataatttaataatatcacggacaaaagcttacctgcatttttaatttcttgtccaataggtacatccagatatgatccaataagtaaagagc |
27732935 |
T |
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| Q |
318 |
tgtcagcactagcaagcttagcagccaatccatcagattcaaa |
360 |
Q |
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| T |
27732936 |
tgtcggcacttgccagcttagcagccaatccatcagattcaaa |
27732978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 417 - 532
Target Start/End: Complemental strand, 27733209 - 27733094
Alignment:
| Q |
417 |
gaaaagagtaagctagaaatcggtgatgcaagggcttatataaaagagaaggtggatgaagtggggagagatttttactttgggaagttgcaaggaagtt |
516 |
Q |
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| T |
27733209 |
gaaaagagaaagccagaaattggtgatgcaagggcttatataaaagagcaggtggatgaagtggggagagctttttacttggggaagttgcaaggaagtt |
27733110 |
T |
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| Q |
517 |
ctgaacagattaacat |
532 |
Q |
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| T |
27733109 |
ctgaacagaataacat |
27733094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 534 - 614
Target Start/End: Complemental strand, 27733066 - 27732986
Alignment:
| Q |
534 |
ggagaagcagaaggaagattatccaaggcttcctcctgtgaaaattaactcagaagataagctgttgactattaattggag |
614 |
Q |
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| T |
27733066 |
ggagaagcagaaggaagagtatccaaggcttcctcctgtgaaaattaagtcagaagataagccgttgactattaattggag |
27732986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 691 - 794
Target Start/End: Original strand, 27733627 - 27733731
Alignment:
| Q |
691 |
ggcttcactcatttgagttttttattgctgagatattgat-cattcgaagtattactagccttgcttccaccgtcagtttggtaaggctccacaggacca |
789 |
Q |
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||||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||||||||| |||||||| ||||| ||||||| |||||||| |
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| T |
27733627 |
ggcttcactcatttgagttttcgattgctgggatattgaggccttcgaagtattactagccttgcttgcaccgtcattttggcaaggctctgcaggacca |
27733726 |
T |
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| Q |
790 |
ttaat |
794 |
Q |
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||||| |
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| T |
27733727 |
ttaat |
27733731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 912
Target Start/End: Original strand, 27701480 - 27701509
Alignment:
| Q |
883 |
gaagattttggttcgtcggaggacggtggc |
912 |
Q |
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| T |
27701480 |
gaagattttggttcgtcggaggacggtggc |
27701509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 27732759 - 27732800
Alignment:
| Q |
178 |
gacaaaccaacaaatcagacagtaatttgagcctcgaaaggt |
219 |
Q |
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| T |
27732759 |
gacaaagcaacaaatcagacagtaatttgagcccccaaaggt |
27732800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 655 - 728
Target Start/End: Original strand, 27733513 - 27733586
Alignment:
| Q |
655 |
ctcctcagtttttacattactgttagctgtgccaatggcttcactcatttgagttttttattgctgagatattg |
728 |
Q |
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| T |
27733513 |
ctccgcagtttttacattactgttggctgcgtcaaaggcttcactagtttgagctttcgattgctgtgatattg |
27733586 |
T |
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