View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4064_low_10 (Length: 424)
Name: NF4064_low_10
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 9400871 - 9401263
Alignment:
| Q |
18 |
aatataaattattgctaaaggtggatttaagaaggtgttaaccaaaaactaaaacaaagattaaagtggaaaatttaattaaattaatagcttaccataa |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9400871 |
aatataaattattgctaaaggtggatttaagaaggtgttaaccaaaaactaaaacaaagattaaagtggaaaatttaattaaa---atagcttaccataa |
9400967 |
T |
|
| Q |
118 |
ggatcccttttatgtgatcaaaagtgacatcaaaagaaaatgaatgcttttccttcaattggagtaagacatcaacaataaccttttcacttgtaaattg |
217 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9400968 |
ggatcccttttatgtgatcaaaagtgatatcaaaagaaaatgaacgcttttccttcaattggagtaagacatcaacaataaccttttcacttgtaaattg |
9401067 |
T |
|
| Q |
218 |
ttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatcaaactccttgaaatttctatcaagacgaccatgcaaccctcttagttta |
317 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9401068 |
ttgttcatttggatccaaatgttcatcaataatttcttggtagaattcatcaaactctttgaaatttctatcaagacgaccatgcaaccctcttagttta |
9401167 |
T |
|
| Q |
318 |
tcaatccaacccataaatgggatataatcagaaacaaagaaagctgtcaacatggcctcaaactcatgcaacattccatggaatttactactctct |
413 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9401168 |
tcaatccaacccataaatggaatataatcagaaacaaagaaagctgtcaacatggcctcaaactcatgcaacattccatggaatttactactctct |
9401263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 411
Target Start/End: Original strand, 20075368 - 20075609
Alignment:
| Q |
170 |
cttcaattggagtaagacatcaacaataaccttttca-cttgtaaattgttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatc |
268 |
Q |
| |
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||||||||| ||||||||||||||||| |||| |||| | | | || |||||| |||||||||||||||||||||||||| |||||||| || ||||| |
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| T |
20075368 |
cttcaattgtagtaagacatcaacaatgacctcttcatcatcttcat-gttgtctatttggatccaaatgttcatcaataacctcttggtaaaactcatc |
20075466 |
T |
|
| Q |
269 |
aaactccttgaaatttctatcaagacgaccatgcaaccctcttagtttatcaatccaacccataaatgggatataatcagaaacaaagaaagctgtcaac |
368 |
Q |
| |
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| |||||| ||||||| || ||||| || | | || ||||||||||||||||||| | ||||| ||||||||||||| |||||||||||| | | |
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| T |
20075467 |
catctccttaaaatttcgttcgagacgcgcacgaagtccagatagtttatcaatccaacccgtgaatggaatataatcagaaataaagaaagctgttatc |
20075566 |
T |
|
| Q |
369 |
atggcctcaaactcatgcaacattccatggaatttactactct |
411 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
20075567 |
atggcctcaaactcatgcaacattccctggaatttactcctct |
20075609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 110 - 355
Target Start/End: Complemental strand, 8976166 - 8975921
Alignment:
| Q |
110 |
taccataaggatcccttttatgtgatcaaaagtgacatcaaaagaaaatgaatgcttttccttcaattggagtaagacatcaacaataaccttttcactt |
209 |
Q |
| |
|
|||||| |||| |||||| |||||||||||||||| |||||||||||| || | |||| ||||||||||||||||| |||||||||||| | |||| | |
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| T |
8976166 |
taccatgaggacccctttgatgtgatcaaaagtgatatcaaaagaaaacgatcgttttttcttcaattggagtaagatatcaacaataacttcttcatct |
8976067 |
T |
|
| Q |
210 |
gtaaattgttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatcaaactccttgaaatttctatcaagacgaccatgcaaccctc |
309 |
Q |
| |
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|||| ||||| || ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
8976066 |
gtaatttgttctctatttggatccaaatgttcatcaataatctcttgataaaattcatcaaactccttgaaatttctatcaagacgaccatgcaatcccc |
8975967 |
T |
|
| Q |
310 |
ttagtttatcaatccaacccataaatgggatataatcagaaacaaa |
355 |
Q |
| |
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| |||||||||||||||| ||| ||||| ||||||||||||||||| |
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|
| T |
8975966 |
taagtttatcaatccaactcatgaatggaatataatcagaaacaaa |
8975921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 110 - 355
Target Start/End: Original strand, 9001948 - 9002190
Alignment:
| Q |
110 |
taccataaggatcccttttatgtgatcaaaagtgacatcaaaagaaaatgaatgcttttccttcaattggagtaagacatcaacaataaccttttcactt |
209 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||| ||| | ||| || ||||||||||||||||||| |||| | |
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|
| T |
9001948 |
taccataaggacccctttgatgtgatcaaaagtgatatcaaaagaaaatgaacgctttttcttaagttgaagcaagacatcaacaataacctcttcatct |
9002047 |
T |
|
| Q |
210 |
gtaaattgttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatcaaactccttgaaatttctatcaagacgaccatgcaaccctc |
309 |
Q |
| |
|
||| |||| || ||||||||||||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
9002048 |
gta---tgttttctatttggatccaaatgttcatctataatctcttgataaaaatcatcaaactccttgaaatttctatcaagacgaccatgcaatcccc |
9002144 |
T |
|
| Q |
310 |
ttagtttatcaatccaacccataaatgggatataatcagaaacaaa |
355 |
Q |
| |
|
| |||||||||||||||| ||| ||||| ||||||||||||||||| |
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|
| T |
9002145 |
taagtttatcaatccaactcatgaatggaatataatcagaaacaaa |
9002190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 172 - 412
Target Start/End: Original strand, 8930020 - 8930257
Alignment:
| Q |
172 |
tcaattggagtaagacatcaacaataaccttttcacttgtaaattgttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatcaaa |
271 |
Q |
| |
|
|||||| |||||||||||||||||||| || | || |||| | ||||| |||||||||||||||||||||||||| |||||||| ||| |||| | |
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| T |
8930020 |
tcaattcgagtaagacatcaacaataaactctccatctgta---ttttgtctatttggatccaaatgttcatcaataacctcttggtaaaatgcatccat |
8930116 |
T |
|
| Q |
272 |
ctccttgaaatttctatcaagacgaccatgcaaccctcttagtttatcaatccaacccataaatgggatataatcagaaacaaagaaagctgtcaacatg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || |||||||||||||||| ||| |||| |||||||||||||||||||||||||||| || | |
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|
| T |
8930117 |
ctccttgaaatttctatcaagacgaccatgcaatcccctaagtttatcaatccaactcatgaatgtaatataatcagaaacaaagaaagctgtcatcaag |
8930216 |
T |
|
| Q |
372 |
gcctcaaactcatgcaacattccatggaatttactactctc |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8930217 |
gcctcaaactcatgcaacattccatggaatttactcctctc |
8930257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 110 - 356
Target Start/End: Complemental strand, 8953077 - 8952831
Alignment:
| Q |
110 |
taccataaggatcccttttatgtgatcaaaagtgacatcaaaagaaaatgaatgcttttccttcaattggagtaagacatcaacaataaccttttcactt |
209 |
Q |
| |
|
|||||| || |||||||| ||||||||||| ||| |||||| ||||||||| | |||| ||| | || ||| ||||||||||||||| ||| |||| | |
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|
| T |
8953077 |
taccatgagaatccctttgatgtgatcaaagttgatatcaaatgaaaatgaacgttttttcttgagttcgagcaagacatcaacaatatcctcttcatct |
8952978 |
T |
|
| Q |
210 |
gtaaattgttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatcaaactccttgaaatttctatcaagacgaccatgcaaccctc |
309 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
8952977 |
gtaatatgttctctatttggatccaaatgttcatcaataatctcttgataaaattcatcaaactccttgaaatttctatcaacacgaccatgcaatcctc |
8952878 |
T |
|
| Q |
310 |
ttagtttatcaatccaacccataaatgggatataatcagaaacaaag |
356 |
Q |
| |
|
| || ||||||||||| ||| | ||||| ||||||||||||| |||| |
|
|
| T |
8952877 |
tgagcttatcaatccatcccgtgaatggaatataatcagaaaaaaag |
8952831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 177 - 355
Target Start/End: Complemental strand, 9027851 - 9027673
Alignment:
| Q |
177 |
tggagtaagacatcaacaataaccttttcacttgtaaattgttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatcaaactcct |
276 |
Q |
| |
|
||||||||||||||||||||| | | |||| ||||| ||||| || |||||||||||||||| |||||||||| ||||| || |||||||||||||||| |
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|
| T |
9027851 |
tggagtaagacatcaacaatatcttcttcatctgtaatttgttctctatttggatccaaatgtacatcaataatctcttgataaaattcatcaaactcct |
9027752 |
T |
|
| Q |
277 |
tgaaatttctatcaagacgaccatgcaaccctcttagtttatcaatccaacccataaatgggatataatcagaaacaaa |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||||||| ||| || || ||||||||||||||||| |
|
|
| T |
9027751 |
tgaaatttctatcaagacgaccatgcaatcccctaagtttatcaatccaactcatgaagggaatataatcagaaacaaa |
9027673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 216 - 411
Target Start/End: Original strand, 8916218 - 8916413
Alignment:
| Q |
216 |
tgttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatcaaactccttgaaatttctatcaagacgaccatgcaaccctcttagtt |
315 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || ||||| || ||||| | |||||| ||||||| || ||||| || | | || ||||| |
|
|
| T |
8916218 |
tgttgtctatttggatccaaatgttcatcaataacctcctggtaaaactcatccatctccttaaaatttcgttcgagacgtgcacgaaggccagatagtt |
8916317 |
T |
|
| Q |
316 |
tatcaatccaacccataaatgggatataatcagaaacaaagaaagctgtcaacatggcctcaaactcatgcaacattccatggaatttactactct |
411 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8916318 |
tatcaatccaacccgtaaatggaatataatcagaaataaagagagctgtcaacatggcctcaaactcatgcaacattccatggaatttactcctct |
8916413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 129 - 355
Target Start/End: Original strand, 8971902 - 8972128
Alignment:
| Q |
129 |
atgtgatcaaaagtgacatcaaaagaaaatgaatgcttttccttcaattggagtaagacatcaacaataaccttttcacttgtaaattgttgtccatttg |
228 |
Q |
| |
|
|||||||| ||||||| ||||| ||| || |||| | || ||| | ||||||||| |||||||||||| | | |||| | ||| ||||| || ||||| |
|
|
| T |
8971902 |
atgtgatcgaaagtgagatcaattgaagataaatgatgtttcttgagttggagtaaaacatcaacaatatcttcttcatctttaatttgttctctatttg |
8972001 |
T |
|
| Q |
229 |
gatccaaatgttcatcaataatttcttggtagaattcatcaaactccttgaaatttctatcaagacgaccatgcaaccctcttagtttatcaatccaacc |
328 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || |||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||||| |||||| |
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|
| T |
8972002 |
gatccaaatgctcatcaataatctcttgataaaattcatcaaactccttgaaatttttatcaacacgaccatgcaatcctctaagcttatcaagccaacc |
8972101 |
T |
|
| Q |
329 |
cataaatgggatataatcagaaacaaa |
355 |
Q |
| |
|
|||| |||| ||||||||| ||||||| |
|
|
| T |
8972102 |
catatatggaatataatcacaaacaaa |
8972128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 216 - 411
Target Start/End: Original strand, 8905374 - 8905569
Alignment:
| Q |
216 |
tgttgtccatttggatccaaatgttcatcaataatttcttggtagaattcatcaaactccttgaaatttctatcaagacgaccatgcaaccctcttagtt |
315 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || ||||| || ||||| | |||||| ||||||| || ||||| || | | || ||||| |
|
|
| T |
8905374 |
tgttgtctatttggatccaaatgttcatcaataacctcctggtaaaactcatccatctccttaaaatttcgttcgagacgtgcacgaaggccagatagtt |
8905473 |
T |
|
| Q |
316 |
tatcaatccaacccataaatgggatataatcagaaacaaagaaagctgtcaacatggcctcaaactcatgcaacattccatggaatttactactct |
411 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
8905474 |
tatcaatccaacccgtaaatggaatataatcagaaataaagagagctgtcaacatggcctcaaactcacgcaacattccatggaatttactcctct |
8905569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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