View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4064_low_13 (Length: 360)
Name: NF4064_low_13
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 11195628 - 11195954
Alignment:
| Q |
19 |
tttactgcataactaaccgtagtaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcg |
118 |
Q |
| |
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|||||||||| | |||| || |||| ||||||| ||||||| |||||| ||||| |||||||| |||| ||||| |||||||||||||||||||||| |
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| T |
11195628 |
tttactgcattcccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcg |
11195727 |
T |
|
| Q |
119 |
tataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttga |
218 |
Q |
| |
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||||||| ||||| | || ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11195728 |
tataatactcaaattgttcttgttccgcaaccacgtta---acatcgagccacatgaagaccaaatcaattgctttattgatcttttccttttcttttga |
11195824 |
T |
|
| Q |
219 |
cgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctc |
318 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11195825 |
cgaaagcatcaaactaatgtccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctc |
11195924 |
T |
|
| Q |
319 |
ttgtcttcatctttgtacttctcagcttct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
11195925 |
ttgtcttcatctttgtacttctcagcttct |
11195954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 11155181 - 11155507
Alignment:
| Q |
19 |
tttactgcataactaaccgtagtaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcg |
118 |
Q |
| |
|
|||||||||| | |||| || |||| ||||||| ||||||| |||||| ||||| |||||||| |||| ||||| |||||||||||||||||||||| |
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|
| T |
11155181 |
tttactgcattcccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcg |
11155280 |
T |
|
| Q |
119 |
tataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttga |
218 |
Q |
| |
|
||||||| ||||| | || ||||||||||| ||||||| |||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||| |
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|
| T |
11155281 |
tataatactcaaattgttcttgttccgcaatcacgtta---acatcgagccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttga |
11155377 |
T |
|
| Q |
219 |
cgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctc |
318 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||| |
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| T |
11155378 |
cgaaagcatcaaactaatatccttatcatttatagcattcctcatgttgtatgcatacgtctctagtacaactctcgcttctaccttcttcatatacctc |
11155477 |
T |
|
| Q |
319 |
ttgtcttcatctttgtacttctcagcttct |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
11155478 |
ttgtcttcatctttgtacttctcagcttct |
11155507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 33 - 347
Target Start/End: Original strand, 11208296 - 11208607
Alignment:
| Q |
33 |
aaccgtagtaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaag |
132 |
Q |
| |
|
|||| |||||||||||| || ||||||| ||||||||||||| |||||| ||||||| || || |||||||||||||||||| ||||| | ||||| |
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| T |
11208296 |
aaccatagtaccttcttccacaccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaagaatgctcctataacactcaaaa |
11208395 |
T |
|
| Q |
133 |
tcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaac |
232 |
Q |
| |
|
||||||||||| | ||| |||||| | || |||||| | ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | | |
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|
| T |
11208396 |
tcttgttgttctactacc---ttattagcgtcaagccacatgaagaccaaatcaactgcgttattgatcttttccttttcttttgacgaaagcttcgagc |
11208492 |
T |
|
| Q |
233 |
taatatccttatcatttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatcttt |
332 |
Q |
| |
|
||| || ||||||||| | || |||||| |||||||| |||||||||| | ||| ||||| ||| | ||||||| ||| |||| ||||||||||||| |
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|
| T |
11208493 |
taacttctggatcatttatggaatccctcatattgtatgcgtacttctctagtgcatttctcgattcaaccttcttcctatgcctcatgtcttcatcttt |
11208592 |
T |
|
| Q |
333 |
gtacttctcagcttc |
347 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
11208593 |
gtatttctcagcttc |
11208607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 350
Target Start/End: Original strand, 11169474 - 11169788
Alignment:
| Q |
33 |
aaccgtagtaccttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaag |
132 |
Q |
| |
|
|||| ||||||||||||||| || ||| ||||||||||||| |||| | | ||||| || || ||||||||||||||||| |||||| ||||| |
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|
| T |
11169474 |
aaccatagtaccttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatgttcaaaa |
11169573 |
T |
|
| Q |
133 |
tcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaac |
232 |
Q |
| |
|
||||||||||| |||||||| |||||| || |||||| | |||||||||||| |||| |||||||| ||| |||||||||||||||||| |||| | | |
|
|
| T |
11169574 |
tcttgttgttctgcaaccac---attaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtttgccttttcttttgacgaaatcttcgagc |
11169670 |
T |
|
| Q |
233 |
taatatccttatcatttatcgcatt-cctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctt |
331 |
Q |
| |
|
|||||||| ||||||||| | ||| |||||| |||||||| ||| |||||| | ||| ||||||||| | ||||||| ||| |||| |||||||||||| |
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|
| T |
11169671 |
taatatccggatcatttat-gaattccctcatattgtatgcgtacatctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctt |
11169769 |
T |
|
| Q |
332 |
tgtacttctcagcttctct |
350 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
11169770 |
tgtatttgtcagcttctct |
11169788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 47 - 347
Target Start/End: Original strand, 11274872 - 11275169
Alignment:
| Q |
47 |
cttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaagtcttgttgttccgc |
146 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||| | | ||||| || || |||||||||||||||||| ||||| | ||||| ||||||||||| || |
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|
| T |
11274872 |
cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgc |
11274971 |
T |
|
| Q |
147 |
aaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatca |
246 |
Q |
| |
|
|||||| |||||| || |||||| | |||||||||||| |||| |||||||| ||||||||||||||| | ||||||||| | ||||||| |||| |
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|
| T |
11274972 |
aaccac---attaacgtcaagccacttaaagaccaaatcagttgcattattgatgttttccttttcttttaatgaaagcttcgagataatatcgggatca |
11275068 |
T |
|
| Q |
247 |
tttatcgcattcctcatgttgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctcagctt |
346 |
Q |
| |
|
||||| || |||||| |||||||| |||||||||| | ||| ||||||||| | ||| ||| ||| ||| ||||||||||||||||||||||||||| |
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|
| T |
11275069 |
tttatgaaatccctcatattgtatgcgtacttctctagtgcatttctcgcttcaacctttttcctatgcctaatgtcttcatctttgtacttctcagctt |
11275168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 166 - 350
Target Start/End: Original strand, 11165377 - 11165561
Alignment:
| Q |
166 |
agccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgt |
265 |
Q |
| |
|
|||||| | ||||||||||||| ||| |||||||| ||||||||||||||||||||||||||| | |||| ||| ||||||||| | || |||||| | |
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|
| T |
11165377 |
agccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatctggatcatttatggaatccctcatat |
11165476 |
T |
|
| Q |
266 |
tgtatgcatacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttctct |
350 |
Q |
| |
|
||||||| ||| |||||| | ||| ||||||||| | ||||||| ||| |||| |||||||||||||||| |||||||||||||| |
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|
| T |
11165477 |
tgtatgcgtacctctctagtgcatttctcgcttcaaccttcttcctatgcctcatgtcttcatctttgtatttctcagcttctct |
11165561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 11242199 - 11242021
Alignment:
| Q |
100 |
acacttgaaagaatgctcgtataataatcaaagtcttgttgttccgcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattga |
199 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||| ||||||| ||||||| ||||||||| ||||| | |||||||||| |||||||||||| | |
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|
| T |
11242199 |
acacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccac---attaacatcaagccatgtgaagaccaaat-aattgctttattaa |
11242104 |
T |
|
| Q |
200 |
tcttttccttttct--tttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgcatacttct |
280 |
Q |
| |
|
|||||||||||| | ||| ||||||||||| | | |||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
11242103 |
tcttttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatggcattccttatgttgtatgcatacttct |
11242021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 174 - 348
Target Start/End: Original strand, 11132051 - 11132225
Alignment:
| Q |
174 |
taagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttatcatttatcgcattcctcatgttgtatgca |
273 |
Q |
| |
|
||||||| ||||||||| |||| |||| |||||| |||| | |||||||||||| |||| |||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
11132051 |
taagaccgaatcaattgtgttatcgatcacttccttgtcttctaacgaaagcttcatcataatctccttatcgtttatggcattcctcatgttatatgca |
11132150 |
T |
|
| Q |
274 |
tacttctctaatacatctctcgcttctagcttcttcatatacctcttgtcttcatctttgtacttctcagcttct |
348 |
Q |
| |
|
||||||| ||| ||| ||| | ||||| ||||||| ||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
11132151 |
cacttctccaatgcatttcttgtttctaccttcttcctatacatcttgtcttcatccttgtacttctcagcttct |
11132225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 276
Target Start/End: Complemental strand, 11315976 - 11315745
Alignment:
| Q |
45 |
ttcttgcagaccatgcacctcatcctttattttcttcaccataattgcattgaatacacttgaaagaatgctcgtataataatcaaagtcttgttgttcc |
144 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| |||||||| |||||| ||| || ||||||||||| || ||| ||| | |||| || ||||||| |
|
|
| T |
11315976 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctatgttcctcaatttcatgttgtttt |
11315877 |
T |
|
| Q |
145 |
gcaaccacgttattaacatcgagccaccttaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaagcttcaaactaatatccttat |
244 |
Q |
| |
|
||| || | | ||||||| ||||| ||| |||| ||||||| | ||||||||||| ||||||||||||| ||||| | || ||||||||||||| |
|
|
| T |
11315876 |
gcatcctcatgattaacacgaagccagagtaaagtcaaaccaattgcatcattgatctttttcttttcttttgacaaaagcataaagctaatatccttat |
11315777 |
T |
|
| Q |
245 |
catttatcgcattcctcatgttgtatgcatac |
276 |
Q |
| |
|
|||| || |||| | |||| |||||||||||| |
|
|
| T |
11315776 |
cattaatggcatccttcatcttgtatgcatac |
11315745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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