View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_15 (Length: 342)
Name: NF4064_low_15
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 28782572 - 28782273
Alignment:
| Q |
1 |
gagtaaggcatggatctcgtcaaggaaaaatttaaaaagtaaggaggaagtcgttttggactaaaccatccaagagcaaccaccgctgaatcagtacaaa |
100 |
Q |
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| T |
28782572 |
gagtaaggcatgaaactcgtcaaggagaaatttaaaaagtaaggaggatgtcgttttggactgaaccatccaagagcaaccatcgctgaatcag-acaaa |
28782474 |
T |
|
| Q |
101 |
aataactgcatgaagattaagctctccagcacacttactaccataagagagcacgaagcttggcaatgaaagcagtacaagctcccaggttgcagaaata |
200 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
28782473 |
aataacggcaggaagattaagctctccagcacacttactaccataagagagcacgaagctcggcattgaaagcagtacaagctcccaggttgcagaaata |
28782374 |
T |
|
| Q |
201 |
tccttgaatgaaacttcgattagaacagatgatccctccatattgaccttaacgacatttaggggtggaggagaccaaccaatccgcctccattgtctct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28782373 |
tccttgaatgaaacttcgattagaacagatgatccctccatattgaccttaacaacatgtaggggtggaggagaccaaccaatccgcctccattgtctct |
28782274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 28789558 - 28789262
Alignment:
| Q |
1 |
gagtaaggcatggatctcgtcaaggaaaaatttaaaaagtaaggaggaagtcgttttggactaaaccatccaagagcaaccaccgctgaatcagtac-aa |
99 |
Q |
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||||||||||||||||| |||||||| | ||||||||||||||||||||||| || ||| ||||||| || | ||||||||||||||||| | || |
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| T |
28789558 |
gagtaaggcatggatcttgtcaaggagagatttaaaaagtaaggaggaagtcattctgggtcgaaccatctgaggg--accaccgctgaatcagttctaa |
28789461 |
T |
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| Q |
100 |
aaataactgcatgaagattaagctctccagcacacttactacca-taag-agagcacgaagcttggcaatgaaagcagtacaagctcccaggttgcagaa |
197 |
Q |
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| T |
28789460 |
aaattactgtacgaggattaagctcacggccacacttactaccaataaggagagcacgaagcacggaatagagagccatacatgctcctaggttgcagaa |
28789361 |
T |
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| Q |
198 |
atatccttgaatgaaacttcgattagaacagatgatccctccatattgaccttaacgacatttaggggtggaggagaccaaccaatccgcctccattgt |
296 |
Q |
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| T |
28789360 |
aaatccttgaatgaaacttccattagaacagatgatccatccatattgaccttaacaacatttgggggtcgaggagaccaaccaatccgcctccattgt |
28789262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 42445114 - 42445076
Alignment:
| Q |
301 |
ggttatcaaatgtggtgcgggttcatctcactcgaccag |
339 |
Q |
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| T |
42445114 |
ggttatcaaatgtggtgcgggttcatctctctcgaccag |
42445076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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