View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_17 (Length: 333)
Name: NF4064_low_17
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 37793138 - 37792828
Alignment:
| Q |
5 |
tgtccaagaaaattcactcacagtctctatgaatgcatccataaccggaagttcactgccatcaaaaactgaattttcatgtgatatagtggaagcgaaa |
104 |
Q |
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| T |
37793138 |
tgtccaaaaaaattcactcacagtctccatgaatgcatccataaacggaagttcactaccatcaaaaactgaattttcatgtgatatagtggaagcgaaa |
37793039 |
T |
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| Q |
105 |
ttttctgttgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtt |
204 |
Q |
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| T |
37793038 |
ttttctgttgttatgcaagagaatccacttgaaaatggttgtgaagatagtggactcgtaatattgggatcgatattgttctcaaaaactccttcaagtt |
37792939 |
T |
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| Q |
205 |
tcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccagaaactctcactaaaattgtccatgtatgt |
304 |
Q |
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| T |
37792938 |
tcttggtttcttccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccagaaattctcactaaaattctccatgtatgt |
37792839 |
T |
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| Q |
305 |
ttccataaaag |
315 |
Q |
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| T |
37792838 |
ttccataaaag |
37792828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 314
Target Start/End: Complemental strand, 37793534 - 37793297
Alignment:
| Q |
77 |
attttcatgtgatatagtggaagcgaaattttctgttgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcg |
176 |
Q |
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| T |
37793534 |
attttcatgtgatattgtggaagtaacattttccattgttattgaagagaatccatttgatgatggttgtgaagatactggactaacactattgggatca |
37793435 |
T |
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| Q |
177 |
atgttgttctcaaaaactccttcaagtttcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtccaga |
276 |
Q |
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| T |
37793434 |
atgttgtactcaaaaactccttcaattttcttggcttcttccattgtaaggtgattacgaaggaaatgtgaactgtcaatcatatatggctctgaccaga |
37793335 |
T |
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| Q |
277 |
aactctcactaaaattgtccatgtatgtttccataaaa |
314 |
Q |
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| T |
37793334 |
aattctcactcaaattctctatgtatgcatccataaaa |
37793297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Complemental strand, 37793229 - 37793133
Alignment:
| Q |
178 |
tgttgttctcaaaaactccttcaagtttcttggtttcatccattgtagggtgattatgggggacatatgaattgtctatcatatatggctctgtcca |
274 |
Q |
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| T |
37793229 |
tgttgttctctaaaactccttcaaatttattggcttcttccaatgtagggtgcttatatggggaataggaagtgtctatcatatatggctctgtcca |
37793133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 232
Target Start/End: Complemental strand, 37809388 - 37809272
Alignment:
| Q |
116 |
tatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtttcttggtttca |
215 |
Q |
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| T |
37809388 |
tatgcaagaggatgcacttgtagatggttgtgaagatggtggactcgtaatattgaaatcactgttgttctctaacatttctccaagtttcttgggtttt |
37809289 |
T |
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| Q |
216 |
tccattgtagggtgatt |
232 |
Q |
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| T |
37809288 |
tccattgtagggtgatt |
37809272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 37792794 - 37792672
Alignment:
| Q |
112 |
ttgttatgcaagagaatccacttgaaaatggttgcgaagattgtggactcgtaatattgggatcgatgttgttctcaaaaactccttcaagtttcttggt |
211 |
Q |
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| T |
37792794 |
ttgttatgcaagacaattcgcttgaagatggttgcggagatatttgatttgcaatattaggatcattgttgctctctaaaactacttcaaatttcttagg |
37792695 |
T |
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| Q |
212 |
ttcatccattgtagggtgattat |
234 |
Q |
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||| |||| |||||||||||||| |
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| T |
37792694 |
ttcttccaatgtagggtgattat |
37792672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 37809533 - 37809493
Alignment:
| Q |
238 |
ggacatatgaattgtctatcatatatggctctgtccagaaa |
278 |
Q |
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| T |
37809533 |
ggacatataaactgtctattatatatggctctgtccagaaa |
37809493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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