View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4064_low_19 (Length: 304)

Name: NF4064_low_19

Description: NF4064

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4064_low_19

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 184; E-Value: 1e-99

Query Start/End: Original strand, 18 - 273

Target Start/End: Original strand, 28789925 - 28790179

Alignment:

Q	18	gaaagcctctcaatcatgaaacagataaacataagttgcattcatgcaactgagaaagacatacctagacttgaaaatatttttgatatgaaggattatg	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\| \|\|\|\|\| \|
T	28789925	gaaagcctctcaatcatgaaactgataaacataagctgcattcatgcaactgagaaagacatacctagactttaaaatatctgtaatatgaaagattacg	28790024	T

Q	118	gtcatccttaaatgatattttaaaaaatgtaaaccaatccatattttgtacaactcaatttcaatattgaacagcgacaacattaaaagcatgggactaa	217	Q
		\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28790025	gtaatccttaa-tgacattttagaaaatgtaaaccaatcgatattttgtacaactcaattttaatattgaacaacgacaacattaaaagcatgggactaa	28790123	T

Q	218	agaaacaatattcaggcaatagtacataaatactaacacatgatgtgcttgcatca	273	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28790124	agaaacaatattcaagcaatagtacataaatactaactcatgatgtgcttgcatca	28790179	T

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Target: chr3; HSP #2

Raw Score: 32; E-Value: 0.000000007

Query Start/End: Original strand, 142 - 205

Target Start/End: Original strand, 28780707 - 28780770

Alignment:

Q	142	aaatgtaaaccaatccatattttgtacaactcaatttcaatattgaacagcgacaacattaaaa	205	Q
		\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|
T	28780707	aaatgcaaacaagtccatattttgtagaactcaacatcaatattgaacagagacaacactaaaa	28780770	T

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