View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_2 (Length: 953)
Name: NF4064_low_2
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_2 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 338 - 682
Target Start/End: Complemental strand, 40736492 - 40736148
Alignment:
| Q |
338 |
gtaaactacataaattaacaaactttgaagaaaaatgatcacaatctatcactactataatataatacctgcactccagctttggctaaagtctcatcaa |
437 |
Q |
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| T |
40736492 |
gtaaactacataaattaacaaactttgaagaaaaataatcacaatctatcactactataatataatacctgaactccagctttggctaaagtctcatcaa |
40736393 |
T |
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| Q |
438 |
tcatcctatactcatgcatcacccaattgcttcgatcaccatgtggagcccgacccgagtgataaacaagcgtcttcttcattccaacagtctcctctcc |
537 |
Q |
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| T |
40736392 |
tcatcctatactcatgcatcacccaattgcttcgatcaccatgcggagcccgacccgagtgataaacaagtgtcttcttcattccaacagtctcctctcc |
40736293 |
T |
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| Q |
538 |
attcttgatggcacgatccttgcctgtagtcttccagtaacctctatcagtagcacgattcgtcctgatactattaccatactttttgtccagcgcagtg |
637 |
Q |
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| T |
40736292 |
attcttgatggcacgatccttgccagtagtcttccagtaacctctatcagtagcacgattcgtcctgatactattaccatactttttgtccagcgcagtg |
40736193 |
T |
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| Q |
638 |
aagaagtaccattccaaatcccttgtcttcagcttcgacaactct |
682 |
Q |
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| T |
40736192 |
aagaagtaccattccaaatcccttgtcttcagcttcgacaactct |
40736148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 40736815 - 40736589
Alignment:
| Q |
10 |
acatcatcaggtacagaaactgccaagggattcacgagttcatcaacatcaggagtaaacccttctagtttcaaaggttcattatcaacaggcggcaagg |
109 |
Q |
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| T |
40736815 |
acatcatcaggtacagaaactgccaagggattcacgagttcatcaacatcaggagtaaacccttctagtttcaaaggttcattatcaacaggcggcaagg |
40736716 |
T |
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| Q |
110 |
gtagcacttgttcaccaaaactctcccattcctcctcaacaaagggagccccgtacttctccccattcttaggccccgaaccactcttctcgaagatcct |
209 |
Q |
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| T |
40736715 |
gtagcacttgttcaccaaaactctcccattcctcctcaacaaagggagccccgtacttctccccattcttaggccccgaaccactcttctcgaagatcct |
40736616 |
T |
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| Q |
210 |
acacaggacataagcatccttctccac |
236 |
Q |
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| T |
40736615 |
acacaggacataagcatccttctccac |
40736589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 720 - 937
Target Start/End: Complemental strand, 40736109 - 40735892
Alignment:
| Q |
720 |
tcatcaagttgagattttgaaggaaaccatgaaaccatagagaagaagataacatactgggaaggtcccatggctcgaatttgtagatgtcgatgacagc |
819 |
Q |
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| T |
40736109 |
tcatcaagttgaaattttgaaggaaaccatgaaaccatagagaagaagataacatactgggaaggtcccatggctcgaatttgtagatgtcgatgacagc |
40736010 |
T |
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| Q |
820 |
gagataatcaaagcaagaaggtaaatttccggtgagtttcttcttgaggtagtaacgaacgatttcttcatccgtagggtggaatcggaatccaggacct |
919 |
Q |
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| T |
40736009 |
gagataatcaaagcaagaaggtaaatttccggtgagtttcttcttgaggtagtaacgaacaatttcttcatccgtagggtggaatcggaatccaggacct |
40735910 |
T |
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| Q |
920 |
tggtagaaagcggtttct |
937 |
Q |
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| T |
40735909 |
tggtagaaagcggtttct |
40735892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 771 - 926
Target Start/End: Original strand, 39062902 - 39063057
Alignment:
| Q |
771 |
acatactgggaaggtcccatggctcgaatttgtagatgtcgatgacagcgagataatcaaagcaagaaggtaaatttccggtgagtttcttcttgaggta |
870 |
Q |
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| T |
39062902 |
acatactaggaagatcccatggttcaaacttgtagatgtcgatgaaagcaagatgatcaaaacagggtggtaactttccagtgagtttccgcttgaggta |
39063001 |
T |
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| Q |
871 |
gtaacgaacgatttcttcatccgtagggtggaatcggaatccaggaccttggtaga |
926 |
Q |
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| T |
39063002 |
gaaacaaactatctcctcatcggtagggtggaatcggaatccaggagcttggtaga |
39063057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 132; Significance: 5e-68; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 398 - 677
Target Start/End: Original strand, 59340 - 59619
Alignment:
| Q |
398 |
tataatacctgcactccagctttggctaaagtctcatcaatcatcctatactcatgcatcacccaattgcttcgatcaccatgtggagcccgacccgagt |
497 |
Q |
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| T |
59340 |
tataatacctgccctccagttttggccaattcttcatcaatcatcctatactcatgcatgacccaattgcttcggttaccatgtggggcccgacccaggt |
59439 |
T |
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| Q |
498 |
gataaacaagcgtcttcttcattccaacagtctcctctccattcttgatggcacgatccttgcctgtagtcttccagtaacctctatcagtagcacgatt |
597 |
Q |
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| T |
59440 |
gataaacaagggtcttcttcattccaactgtctcctccccgtttttgataacccgatcctttccagtagtcttccaataacctcgatcagtagcacgatt |
59539 |
T |
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| Q |
598 |
cgtcctgatactattaccatactttttgtccagcgcagtgaagaagtaccattccaaatcccttgtcttcagcttcgaca |
677 |
Q |
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| T |
59540 |
cgtcctgcatccagtgccatacttcttgtccagcgcactgaagaagtaccattccaaatccttagttttcagcttggaca |
59619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 57732 - 57825
Alignment:
| Q |
143 |
cctcaacaaagggagccccgtacttctccccattcttaggccccgaaccactcttctcgaagatcctacacaggacataagcatccttctccac |
236 |
Q |
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| T |
57732 |
cctctacaaagggagccccatacttctccccattcttaggccctgaaccactcttctcgaagatcctacacagcacataagcatccttctccac |
57825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 771 - 926
Target Start/End: Original strand, 60396 - 60551
Alignment:
| Q |
771 |
acatactgggaaggtcccatggctcgaatttgtagatgtcgatgacagcgagataatcaaagcaagaaggtaaatttccggtgagtttcttcttgaggta |
870 |
Q |
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| T |
60396 |
acatactaggaagatcccatggttcaaacttgtagatatcgatgaaagcaagatgatcaaaacagggtggtaactttccggtgagtttccgcttcagata |
60495 |
T |
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| Q |
871 |
gtaacgaacgatttcttcatccgtagggtggaatcggaatccaggaccttggtaga |
926 |
Q |
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||| |||||| |||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
60496 |
aaaacaaacgatctcttcatcagtagggtggaatcggaatccaggagcttggtaga |
60551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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