View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_23 (Length: 265)
Name: NF4064_low_23
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_23 |
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| [»] chr6 (5 HSPs) |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 4621907 - 4622163
Alignment:
| Q |
3 |
cacagatagatgaaatgtgtagatcataactgttatcagtatatatgtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatga |
102 |
Q |
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| T |
4621907 |
cacagatagatgaaatgtgtagatcataactgttatcagtatatatgtaaatgaatttcatacaattatatgtatcattatttctattgaactaaaatga |
4622006 |
T |
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| Q |
103 |
cataataagttacatttatatggcttacattttaaatataactagcacctcacactatgcatcattannnnnnngacaataaaataaattcaagagaaga |
202 |
Q |
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| T |
4622007 |
cataataagttacatttatatggcttagattttaaatataactagcacctcacactatgcatcattatttttttgacaataaaataaattcaagagaaga |
4622106 |
T |
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| Q |
203 |
tgacacaaccacatttcctgggataaatcactttaattttagtattgtttaagcatgacctcc |
265 |
Q |
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| T |
4622107 |
tgacacaaccacatttcctgg------ccactttaattttagtattgtttaagcatgacctcc |
4622163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 4256936 - 4256723
Alignment:
| Q |
49 |
gtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttacatttatatggcttacattttaaatataactagc |
148 |
Q |
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|||| ||||||||||||||||||||| | | |||||| |||||||| ||||| ||||||||||| | | | | ||||||| |||| ||||||||| ||| |
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| T |
4256936 |
gtaactgaatttcatacaattatatgaaacattatttatattgaaccaaaatcacataataagtcatactaa-atggctttaattt-aaatataacaagc |
4256839 |
T |
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| Q |
149 |
acctcacacta--tgcatcattannnnnnngacaataaaataaattcaagagaagatgacacaaccacatttcctgggataaatcactttaattttagta |
246 |
Q |
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| T |
4256838 |
acctcacactaaatgcatcat--attttttgacaataaaacaaattcaagaggagattacacaaccacatttcatagaataaattactataa-tctagta |
4256742 |
T |
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| Q |
247 |
ttgtttaagcatgacctcc |
265 |
Q |
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| T |
4256741 |
ttgtttaagcatgacctcc |
4256723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 265
Target Start/End: Complemental strand, 4267491 - 4267277
Alignment:
| Q |
49 |
gtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttacatttatatggcttacattttaaatataactagc |
148 |
Q |
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| T |
4267491 |
gtaactgaatttcatacaattatatgaaacattatttatattgaaccaaaatcacataataaatcatactaa-atggcttttattttaaatataacaagc |
4267393 |
T |
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| Q |
149 |
acctcacacta--tgcatcattannnnnnngacaataaaataaattcaagagaagatgacacaaccacatttcctgggataaatcactttaattttagta |
246 |
Q |
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| T |
4267392 |
acctcacactaaatgcatcat--attttttgacaataaaacaaattcaagaggagattacacaactacaattcctagaataaatgacttcaa-tctagta |
4267296 |
T |
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| Q |
247 |
ttgtttaagcatgacctcc |
265 |
Q |
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| T |
4267295 |
ttgtttaagcatgacctcc |
4267277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 4300067 - 4299985
Alignment:
| Q |
56 |
aatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttacatttatatggcttacattttaaa |
138 |
Q |
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| T |
4300067 |
aattccatacaaatataagtatcattatttatattgaactcaaataacataataaatcatatttatatggcttacaatttaaa |
4299985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 4260387 - 4260349
Alignment:
| Q |
116 |
atttatatggcttacattttaaatataactagcacctca |
154 |
Q |
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| T |
4260387 |
atttatatggtttacattttaaatataacaagcacctca |
4260349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 24102840 - 24102950
Alignment:
| Q |
49 |
gtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatgacataataagttacatttatatggcttacattttaaatataactagc |
148 |
Q |
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|||| |||||| |||||||||||| | | | |||||| |||||||| ||||| ||||||||||| | | |||||||| |||||||||||||| ||||||| |
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| T |
24102840 |
gtaattgaattccatacaattatacgaaacattatttatattgaaccaaaatcacataataagtcatacttatatggtttacattttaaatagaactagc |
24102939 |
T |
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| Q |
149 |
acctcacacta |
159 |
Q |
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| T |
24102940 |
acctcacacta |
24102950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 24109282 - 24109397
Alignment:
| Q |
49 |
gtaaatgaatttcatacaattatatgtatcgttatttctattgaactaaaatga-----cataataagttacatttatatggcttacattttaaatataa |
143 |
Q |
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|||| ||||||||||| | ||||||| | | |||||| | |||||||||||| | |||||||||| | | |||||||||||||||||||||||||| |
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| T |
24109282 |
gtaactgaatttcataaagttatatgaaacattatttatgttgaactaaaattaaatcacataataagtcatacttatatggcttacattttaaatataa |
24109381 |
T |
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| Q |
144 |
ctagcacctcacacta |
159 |
Q |
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| T |
24109382 |
ccagcacctcacacta |
24109397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 4879 - 4797
Alignment:
| Q |
182 |
taaaataaattcaagagaagatgacacaaccacatttcctgggataaatcactttaattttagtattgtttaagcatgacctcc |
265 |
Q |
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||||||||||||||||| | || |||||||||| |||| | | ||| || ||||||| | ||| |||||||||||||||||||| |
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| T |
4879 |
taaaataaattcaagaggaaatcacacaaccacgtttcatagaatatataactttaa-tctagcattgtttaagcatgacctcc |
4797 |
T |
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