View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4064_low_25 (Length: 243)

Name: NF4064_low_25
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4064_low_25
NF4064_low_25
[»] chr7 (18 HSPs)
chr7 (18-243)||(22897798-22898023)
chr7 (20-243)||(22825789-22826009)
chr7 (20-243)||(22814558-22814778)
chr7 (26-243)||(22888835-22889043)
chr7 (20-243)||(22893484-22893704)
chr7 (20-243)||(22875459-22875673)
chr7 (26-243)||(22880129-22880342)
chr7 (20-243)||(22830562-22830782)
chr7 (20-243)||(22839583-22839803)
chr7 (20-151)||(22804867-22804995)
chr7 (20-155)||(22809151-22809283)
chr7 (20-156)||(22885134-22885266)
chr7 (185-243)||(22913367-22913425)
chr7 (20-175)||(22857969-22858121)
chr7 (193-243)||(22805019-22805069)
chr7 (187-243)||(22809336-22809392)
chr7 (187-243)||(22858154-22858210)
chr7 (193-243)||(22885326-22885376)
[»] chr1 (1 HSPs)
chr1 (20-243)||(21150963-21151183)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 22897798 - 22898023
Alignment:
Q  18 acctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897798 acctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaac 22897897  T
Q  118 caaacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22897898 caaacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttt 22897997  T
Q  218 tcagcttgaccattaaccttaaaact 243  Q
    ||||||||||||||||||||||||||    
T  22897998 tcagcttgaccattaaccttaaaact 22898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 22825789 - 22826009
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| |||||||||||||| |||||||||||||| | |||| ||||||||||   |  |||||||||||| ||||||||||| | ||||||||| ||||    
T  22825789 ctatgtgggccatattcatgttcccaatcttcaagaacctcatcaaacttctt---caatttgatataatacataacccctaaagatatcatgaatacca 22825885  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttc 219  Q
    ||||||| |||||| | ||||| ||||||||||||||  |||||||||||||||||||||||||| |||| |||||||||||||| |||||||| ||||     
T  22825886 aacttaggaaaacccatggcaacccaacagttaaaaatttggactcttttttctcaccaaatcttcgtagtttaggaagttcagaaattacaagattttg 22825985  T
Q  220 agcttgaccattaaccttaaaact 243  Q
    |||||||||||||| |||||||||    
T  22825986 agcttgaccattaagcttaaaact 22826009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 22814558 - 22814778
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| |||||||||||||| |||||||||||||| | |||||||||| ||||   || |||||||||||| ||||||||||| ||||||||||| | ||    
T  22814558 ctatgtgggccatattcatgttcccaatcttcaagaatctcagcaaacatctt---ccgtttgatataatatataacccctaaagttatcatgaatagca 22814654  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttc 219  Q
    |||||||||||| ||||||||| ||||||||||||||  | |||| ||||  |||| |||||  || |||||||||||||||||| ||| |||||||||     
T  22814655 aacttagcaaaatcaaaggcaacccaacagttaaaaatttagacttttttacctcagcaaatactgttagcttaggaagttcagatatttcaaggttttg 22814754  T
Q  220 agcttgaccattaaccttaaaact 243  Q
    |||||| |||||||||||||||||    
T  22814755 agcttggccattaaccttaaaact 22814778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 22888835 - 22889043
Alignment:
Q  26 gggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaaccaaactta 125  Q
    |||||||||||||| |||||||||||||| | |||| ||||||||||   |  ||||| |||||| ||||||||||| ||||||||||| ||||||||||    
T  22888835 gggccatattcatgttcccaatcttcaagaacctcatcaaacttctt---caatttgacataatacataacccctaaagttatcatgaataccaaactta 22888931  T
Q  126 gcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttcagcttg 225  Q
    | |||| ||| ||||||||||||||||||||  | |||| |||||||||  ||      ||||| |||||||||||||||||| ||||||||| ||||||    
T  22888932 ggaaaatcaatggcaatccaacagttaaaaatttcgacttttttttctctgca------ggtagtttaggaagttcagagatttcaaggttttgagcttg 22889025  T
Q  226 accattaaccttaaaact 243  Q
    ||||||||||||||||||    
T  22889026 accattaaccttaaaact 22889043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 22893484 - 22893704
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| ||||||||||| || |||||||||||||| | |||||||||||||||   || | |||||||||| ||||||||||| ||||||||||| | ||    
T  22893484 ctatgtgggccatattcttgttcccaatcttcaagaatctcagcaaacttctt---ccgtctgatataatacataacccctaaagttatcatgaatatca 22893580  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttc 219  Q
    |||||| |||||  |||||||| ||||||||||||||  | || |   |||||||| | |||  ||||| || ||||||||||||||||||||||||||     
T  22893581 aacttatcaaaattaaaggcaacccaacagttaaaaaatttgatttcgttttctcagctaatactggtaactcaggaagttcagagattacaaggttttg 22893680  T
Q  220 agcttgaccattaaccttaaaact 243  Q
    |||||||||||||| |||||||||    
T  22893681 agcttgaccattaatcttaaaact 22893704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 22875459 - 22875673
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| |||||||||| ||| |||||||||||||| | |||| ||||||||||   |  ||||| |||||| |||| |||||  ||||||||||| ||||    
T  22875459 ctatgtgggccatattgatgttcccaatcttcaagaacctcatcaaacttctt---caatttgacataatacataatccctatagttatcatgaatacca 22875555  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttc 219  Q
    |||||||||||| ||||||||||||||||||||||||  | |||| |||||||||  ||      ||||| |||||||||||||||||| ||||| |||     
T  22875556 aacttagcaaaatcaaaggcaatccaacagttaaaaatttcgacttttttttctctgca------ggtagtttaggaagttcagagatttcaagggtttg 22875649  T
Q  220 agcttgaccattaaccttaaaact 243  Q
    ||||||||||||||||||||||||    
T  22875650 agcttgaccattaaccttaaaact 22875673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 22880129 - 22880342
Alignment:
Q  26 gggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaaccaaactta 125  Q
    |||||||||||||| | |||||||||||| |  ||| ||||||||||   |  ||||| |||||| ||||||||||| ||||||||||| ||||||||||    
T  22880129 gggccatattcatgtttccaatcttcaagaacttcatcaaacttctt---caatttgagataatacataacccctaaagttatcatgaataccaaactta 22880225  T
Q  126 gcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttcagcttg 225  Q
    |||||| |||||| || ||||||||||||||  | |||| |||||| ||| |||||  |  | ||| | |||| ||||||||| ||||||||| ||||||    
T  22880226 gcaaaatcaaaggtaacccaacagttaaaaattttgact-ttttttgtcagcaaatactattggctcatgaagctcagagatttcaaggttttgagcttg 22880324  T
Q  226 accattaaccttaaaact 243  Q
    ||||||||||||||||||    
T  22880325 accattaaccttaaaact 22880342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 22830562 - 22830782
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| |||||||||||||| |||||||||||||| | |||| ||||||||||   |  |||||||||||| ||||||||||| ||||| ||||| ||||    
T  22830562 ctatgtgggccatattcatgttcccaatcttcaagaacctcatcaaacttctt---caatttgatataatacataacccctaaagttatgatgaatacca 22830658  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttc 219  Q
    |||||||||| | ||||||||| | ||||||||||||  |||||| |||||||||| |||||  |  |     |||||| ||||||||| |||||||||     
T  22830659 aacttagcaatatcaaaggcaaccgaacagttaaaaatttggacttttttttctcagcaaatactctttctccaggaaggtcagagatttcaaggttttg 22830758  T
Q  220 agcttgaccattaaccttaaaact 243  Q
    || ||| ||||||||| |||||||    
T  22830759 agattggccattaaccataaaact 22830782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 243
Target Start/End: Original strand, 22839583 - 22839803
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| |||||||||||||| |||||||||||||| | |||| ||||||||||   |  |||||||||||| ||||||||||| ||||| ||||| ||||    
T  22839583 ctatgtgggccatattcatgttcccaatcttcaagaacctcaacaaacttctt---caatttgatataatacataacccctaaagttatgatgaatacca 22839679  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttc 219  Q
    |||||||||| | ||||||||| | ||||||||||||  |||||| |||||||||| |||||  |  |     |||||| ||||||||| |||||||||     
T  22839680 aacttagcaatatcaaaggcaaccgaacagttaaaaatttggacttttttttctcagcaaatactctttctccaggaaggtcagagatttcaaggttttg 22839779  T
Q  220 agcttgaccattaaccttaaaact 243  Q
    || ||| ||||||||| |||||||    
T  22839780 agattggccattaaccataaaact 22839803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 22804867 - 22804995
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| ||||||||||| || |||||||||||||| | ||||| |||||||||   || |||||||||||||||||||||||| ||||||||||| ||||    
T  22804867 ctatgtgggccatattcttgttcccaatcttcaagaatctcagaaaacttctt---ccgtttgatataataaataacccctaaagttatcatgaatacca 22804963  T
Q  120 aacttagcaaaaccaaaggcaatccaacagtt 151  Q
    ||||||| ||||  |||||||| |||||||||    
T  22804964 aacttaggaaaattaaaggcaacccaacagtt 22804995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 22809151 - 22809283
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| || |||||||| || |||||||||||||| | |||||||||||||||   || |||||||||||| |||| |||||||||||||||||| | ||    
T  22809151 ctatgtggaccatattcctgttcccaatcttcaagaatctcagcaaacttctt---ccatttgatataatacataatccctaaggttatcatgaataaca 22809247  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaa 155  Q
    |||||||||||  ||||||||| |||||||||||||    
T  22809248 aacttagcaaactcaaaggcaacccaacagttaaaa 22809283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 22885134 - 22885266
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    |||||||||||||||||||| |||||||||||||| | |||||||||| |||   ||| |||||||||||| |||| |||||| ||||||||||| | |     
T  22885134 ctatgagggccatattcatgttcccaatcttcaagaatctcagcaaacatct---tccgtttgatataatatataa-ccctaaagttatcatgaatagcg 22885229  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaa 156  Q
    |||| ||||||| ||||||||| ||||||||||||||    
T  22885230 aactaagcaaaatcaaaggcaacccaacagttaaaaa 22885266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 22913367 - 22913425
Alignment:
Q  185 ggtagcttaggaagttcagagattacaaggttttcagcttgaccattaaccttaaaact 243  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  22913367 ggtaacttaggaagttcagagattacaagattttgagcttgaccattaaccttaaaact 22913425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 22857969 - 22858121
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| |||||||||||||| |||||||||||||| | || |||||||||||   ||  || ||||| ||| |||| || ||| | ||| ||||| | ||    
T  22857969 ctatgtgggccatattcatgttcccaatcttcaagaaccttagcaaacttct---tctgttcgatatgatacataatccttaaagctattatgaatagca 22858065  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctca 175  Q
    ||||||| |||| ||||||||| ||||||||||||    | |||||||||||||||    
T  22858066 aacttaggaaaatcaaaggcaacccaacagttaaagtttttgactcttttttctca 22858121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 22805019 - 22805069
Alignment:
Q  193 aggaagttcagagattacaaggttttcagcttgaccattaaccttaaaact 243  Q
    ||||| || ||||||||||||||||| ||||||||||||||||||||||||    
T  22805019 aggaaattgagagattacaaggttttgagcttgaccattaaccttaaaact 22805069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 22809336 - 22809392
Alignment:
Q  187 tagcttaggaagttcagagattacaaggttttcagcttgaccattaaccttaaaact 243  Q
    ||||| |||||||| ||||||  ||||||||| ||||||||||||||||||||||||    
T  22809336 tagctcaggaagtttagagatatcaaggttttgagcttgaccattaaccttaaaact 22809392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 22858154 - 22858210
Alignment:
Q  187 tagcttaggaagttcagagattacaaggttttcagcttgaccattaaccttaaaact 243  Q
    ||||| |||||||| ||||||| ||||||||| |||||| |||||||||||||||||    
T  22858154 tagctcaggaagtttagagatttcaaggttttgagcttggccattaaccttaaaact 22858210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 22885326 - 22885376
Alignment:
Q  193 aggaagttcagagattacaaggttttcagcttgaccattaaccttaaaact 243  Q
    |||||||||||||||| ||||||||| |||||| | |||||||||||||||    
T  22885326 aggaagttcagagatttcaaggttttgagcttggctattaaccttaaaact 22885376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 21151183 - 21150963
Alignment:
Q  20 ctatgagggccatattcatgctcccaatcttcaagcaactcagcaaacttctttctccttttgatataataaataacccctaaggttatcatgaaaacca 119  Q
    ||||| |||||||||||||| |||||||||||||| | ||||| |||||||||   || |||||||||||| ||||||||||| ||||||||||| ||||    
T  21151183 ctatgtgggccatattcatgttcccaatcttcaagaatctcagaaaacttctt---ccgtttgatataatacataacccctaaagttatcatgaatacca 21151087  T
Q  120 aacttagcaaaaccaaaggcaatccaacagttaaaaacatggactcttttttctcaccaaatcttggtagcttaggaagttcagagattacaaggttttc 219  Q
    |||| ||||||| ||||||||| | || |||||||||  |||| | ||||||||||  ||||  || ||  | |||||||||||||||| |||||||||     
T  21151086 aactaagcaaaatcaaaggcaaactaatagttaaaaatttggatttttttttctcagaaaatactgttacttcaggaagttcagagatttcaaggttttg 21150987  T
Q  220 agcttgaccattaaccttaaaact 243  Q
    |||  | |||||||||||||||||    
T  21150986 agccaggccattaaccttaaaact 21150963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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