View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4064_low_26 (Length: 237)

Name: NF4064_low_26
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4064_low_26
NF4064_low_26
[»] chr4 (8 HSPs)
chr4 (118-220)||(37194077-37194179)
chr4 (1-116)||(55933852-55933972)
chr4 (56-116)||(55934930-55934990)
chr4 (1-45)||(55935012-55935056)
chr4 (1-44)||(23569178-23569221)
chr4 (1-44)||(25645018-25645061)
chr4 (1-42)||(6922528-6922569)
chr4 (56-93)||(23569248-23569285)
[»] chr2 (10 HSPs)
chr2 (1-114)||(13883480-13883592)
chr2 (1-114)||(14023605-14023717)
chr2 (56-116)||(8511362-8511422)
chr2 (60-116)||(13995067-13995123)
chr2 (1-98)||(31025237-31025334)
chr2 (1-116)||(25945334-25945449)
chr2 (1-44)||(22701430-22701473)
chr2 (2-44)||(13994992-13995034)
chr2 (1-44)||(8511303-8511346)
chr2 (1-42)||(40598786-40598827)
[»] chr7 (7 HSPs)
chr7 (1-116)||(5950995-5951111)
chr7 (1-44)||(10463673-10463716)
chr7 (1-42)||(1729943-1729984)
chr7 (1-42)||(35500304-35500345)
chr7 (1-42)||(37231123-37231164)
chr7 (56-116)||(9385541-9385601)
chr7 (1-41)||(36644398-36644438)
[»] chr6 (2 HSPs)
chr6 (1-112)||(34378690-34378805)
chr6 (1-44)||(25163841-25163884)
[»] chr5 (6 HSPs)
chr5 (56-116)||(8041545-8041605)
chr5 (1-44)||(8041628-8041671)
chr5 (1-44)||(4299391-4299434)
chr5 (1-42)||(16048746-16048787)
chr5 (1-44)||(970769-970812)
chr5 (1-44)||(39406425-39406468)
[»] chr8 (4 HSPs)
chr8 (56-116)||(7483566-7483626)
chr8 (1-45)||(7483646-7483690)
chr8 (1-44)||(11856379-11856422)
chr8 (1-43)||(18809937-18809979)
[»] chr3 (5 HSPs)
chr3 (56-116)||(54596639-54596699)
chr3 (1-116)||(7881481-7881600)
chr3 (1-45)||(54596575-54596619)
chr3 (1-44)||(17054967-17055010)
chr3 (1-44)||(32950692-32950735)
[»] chr1 (5 HSPs)
chr1 (1-44)||(43680729-43680772)
chr1 (1-44)||(51619775-51619818)
chr1 (1-42)||(3898130-3898171)
chr1 (1-44)||(16265724-16265767)
chr1 (1-44)||(26442265-26442308)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 37194179 - 37194077
Alignment:
Q  118 agtaaagaaataggtaataatgcatatacattcaatattgaagccgtatttttcgttagccttactataatttattcaatgctgcctaactaacaggcca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37194179 agtaaagaaataggtaataatgcatatacattcaatattgaagccgtatttttcgttagccttactataatttattcaatgctgcctaactaacaggcca 37194080  T
Q  218 ggg 220  Q
    |||    
T  37194079 ggg 37194077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 55933972 - 55933852
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatacnnnnnnnnnn-----cttgtaaaagcatgtcatgcaccatgcaaaacccataagg 95  Q
    |||||||||||||||||||||||| |||||||||||||||||||                ||| ||||||||||||||||||||||||| ||||||||||    
T  55933972 taatactgggttgacctacacatgtaagttataagaccaacataaaaaataaaaaataaacttataaaagcatgtcatgcaccatgcaagacccataagg 55933873  T
Q  96 gtcgtgtaccttaaacggcgc 116  Q
    |||||||||||||||||||||    
T  55933872 gtcgtgtaccttaaacggcgc 55933852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 55934990 - 55934930
Alignment:
Q  56 cttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcgtgtaccttaaacggcgc 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  55934990 cttgtaaaagcatgtcatgcaccatgcaagacccataagggtcatgtaccttaaacggcgc 55934930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 55935056 - 55935012
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatac 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55935056 taatactgggttgacctacacatgcaagttataagaccaacatac 55935012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23569178 - 23569221
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  23569178 taatactgggttgacctacacatgtaagttataagaccaacata 23569221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25645018 - 25645061
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  25645018 taatactggcttgacctacaaatgcaagttataagaccaacata 25645061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6922569 - 6922528
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaaca 42  Q
    ||||| ||| |||||||||| |||||||||||||||||||||    
T  6922569 taatattggcttgacctacaaatgcaagttataagaccaaca 6922528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 23569248 - 23569285
Alignment:
Q  56 cttgtaaaagcatgtcatgcaccatgcaaaacccataa 93  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  23569248 cttgtaaaagcatgccatgcaccatgcaagacccataa 23569285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 13883480 - 13883592
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatacnnnnnnnnnncttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcgt 100  Q
    |||||||||||||||||||||||| |||||||||||| || |||           ||||||||||||||||||||||||||||| |||||||||||||||    
T  13883480 taatactgggttgacctacacatgtaagttataagactaatata-aaaaaaaaaacttgtaaaagcatgtcatgcaccatgcaagacccataagggtcgt 13883578  T
Q  101 gtaccttaaacggc 114  Q
    ||||||||||||||    
T  13883579 gtaccttaaacggc 13883592  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14023605 - 14023717
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatacnnnnnnnnnncttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcgt 100  Q
    |||||||||||||||||||||||| |||||||||||| || |||           ||||||||||||||||||||||||||||| |||||||||||||||    
T  14023605 taatactgggttgacctacacatgtaagttataagactaatata-aaaaaaaaaacttgtaaaagcatgtcatgcaccatgcaagacccataagggtcgt 14023703  T
Q  101 gtaccttaaacggc 114  Q
    ||||||||||||||    
T  14023704 gtaccttaaacggc 14023717  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 8511362 - 8511422
Alignment:
Q  56 cttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcgtgtaccttaaacggcgc 116  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  8511362 cttgtaaaagcatgtcatgcaccatgcaagacccataagagtcgtgtaccttaaacggcgc 8511422  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 13995067 - 13995123
Alignment:
Q  60 taaaagcatgtcatgcaccatgcaaaacccataagggtcgtgtaccttaaacggcgc 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13995067 taaaagcatgtcatgcaccatgcaagacccataagggtcgtgtaccttaaacggcgc 13995123  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 31025237 - 31025334
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatacnnnnnnnnnncttgtaaaagcatgtcatgcaccatgcaaaacccataagggtc 98  Q
    |||||| | ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||| ||| ||| |||||||||||||    
T  31025237 taataccgagttgacctacacatgcaagttataagaccaacatacaaaagaaaaacttgtaaaagcatgtcatgcatcatccaagacccataagggtc 31025334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 25945449 - 25945334
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatac--nnnnnnnnnncttgtaaaagcatgtcatgcaccatgcaaaacccataagggtc 98  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||            ||||||||||| ||||  ||||||||||| |||||||||||||    
T  25945449 taatactggattgaccaacacatgcaagttataagaccaacatacaataaaaaaaaacttgtaaaagcttgtc--gcaccatgcaagacccataagggtc 25945352  T
Q  99 gtgtaccttaaacggcgc 116  Q
    |  |||||||||||||||    
T  25945351 gcctaccttaaacggcgc 25945334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22701473 - 22701430
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  22701473 taatactgggttgacctacacatgcaaattataagaccaacata 22701430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 13994992 - 13995034
Alignment:
Q  2 aatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  13994992 aatactgggttgacctacacatgtaagttataagaccaacata 13995034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8511303 - 8511346
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||    
T  8511303 taatactaggttgacctacatatgtaagttataagaccaacata 8511346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40598786 - 40598827
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaaca 42  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  40598786 taatactgatttgacctacaaatgcaagttataagaccaaca 40598827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 5950995 - 5951111
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatacnnnnnnnnnn-cttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcg 99  Q
    |||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||| ||| | ||||||||||||    
T  5950995 taatactgggttgacctacacatgtaagttataagaccaacataaaaaaaaaaaaacttgtaaaagcatgtcatgcaccatacaagatccataagggtcg 5951094  T
Q  100 tgtaccttaaacggcgc 116  Q
    |||||||||||||||||    
T  5951095 tgtaccttaaacggcgc 5951111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10463716 - 10463673
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  10463716 taatactggcttgacctacaaatgcaagttataagaccaacata 10463673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1729984 - 1729943
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaaca 42  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  1729984 taatactggtttgacctacaaatgcaagttataagaccaaca 1729943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35500345 - 35500304
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaaca 42  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  35500345 taatactggtttgacctacaaatgcaagttataagaccaaca 35500304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37231164 - 37231123
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaaca 42  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  37231164 taatactggcttgacctacaaatgcaagttataagaccaaca 37231123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 9385601 - 9385541
Alignment:
Q  56 cttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcgtgtaccttaaacggcgc 116  Q
    ||||| |||||| |||  ||||||||||| |||||| | ||||| ||||||||||||||||    
T  9385601 cttgtcaaagcaggtcgcgcaccatgcaagacccattacggtcgcgtaccttaaacggcgc 9385541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36644398 - 36644438
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaac 41  Q
    ||||||||  |||||||||| ||||||||||||||||||||    
T  36644398 taatactgacttgacctacaaatgcaagttataagaccaac 36644438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34378805 - 34378690
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatacnnnnnnnnnnc----ttgtaaaagcatgtcatgcaccatgcaaaacccataaggg 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||           |    |||||||||||||||||||||||||||| |||||||||||    
T  34378805 taatactgggttgacctacacatgcaagttataagaccaacataaaaaataaaaacaaacttgtaaaagcatgtcatgcaccatgcaagacccataaggg 34378706  T
Q  97 tcgtgtaccttaaacg 112  Q
    || |||||||||||||    
T  34378705 tcatgtaccttaaacg 34378690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25163841 - 25163884
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  25163841 taatactggcttgacctacaaatgcaagttataagaccaacata 25163884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 8041605 - 8041545
Alignment:
Q  56 cttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcgtgtaccttaaacggcgc 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8041605 cttgtaaaagcatgtcatgcaccatgcaagacccataagggtcgtgtaccttaaacggcgc 8041545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8041671 - 8041628
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  8041671 taatactgggttgacctacacatgtaagttataagaccaacata 8041628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 4299434 - 4299391
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  4299434 taatactggcttgacctacaaatgcaagttataagaccaacata 4299391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16048746 - 16048787
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaaca 42  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  16048746 taatactggcttgacctacaaatgcaagttataagaccaaca 16048787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 970769 - 970812
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| || ||||||||||||||||||||    
T  970769 taatactggcttgacctacaaatacaagttataagaccaacata 970812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39406425 - 39406468
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||    
T  39406425 taatactggcttgacatacaaatgcaagttataagaccaacata 39406468  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 7483626 - 7483566
Alignment:
Q  56 cttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcgtgtaccttaaacggcgc 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  7483626 cttgtaaaagcatgtcatgcaccatgcaagacccataagggtcatgtaccttaaacggcgc 7483566  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7483690 - 7483646
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatac 45  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  7483690 taatactggattgacctacacatgcaagttataagaccaacatac 7483646  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11856379 - 11856422
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  11856379 taatactggcttgacctacaaatgcaagttataagaccaacata 11856422  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18809937 - 18809979
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacat 43  Q
    ||||||||| |||||||||| ||||||||||||||||||||||    
T  18809937 taatactggcttgacctacaaatgcaagttataagaccaacat 18809979  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 54596639 - 54596699
Alignment:
Q  56 cttgtaaaagcatgtcatgcaccatgcaaaacccataagggtcgtgtaccttaaacggcgc 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  54596639 cttgtaaaagcatgtcatgcaccatgcaagacccataagggtcatgtaccttaaacggcgc 54596699  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 7881600 - 7881481
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatac----nnnnnnnnnncttgtaaaagcatgtcatgcaccatgcaaaacccataaggg 96  Q
    ||||||||| |||| ||||||||| ||||||||||||||||||||              ||||||||||||||||| ||||||||||| |||||||||||    
T  7881600 taatactggattgatctacacatgtaagttataagaccaacatacaaaaaaaaaaaaaacttgtaaaagcatgtcacgcaccatgcaagacccataaggg 7881501  T
Q  97 tcgtgtaccttaaacggcgc 116  Q
    | | || |||||||||||||    
T  7881500 ttgcgtgccttaaacggcgc 7881481  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 54596575 - 54596619
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacatac 45  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  54596575 taatactgggttgacctacacatgcaagttacaagaccaacatac 54596619  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 17054967 - 17055010
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  17054967 taatactggcttgacctacaaatgcaagttataagaccaacata 17055010  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32950735 - 32950692
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  32950735 taatactggtttgacctacaaatgcaagttataagaccaacata 32950692  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43680729 - 43680772
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  43680729 taatactggcttgacctacaaatgcaagttataagaccaacata 43680772  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 51619775 - 51619818
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  51619775 taatactggcttgacctacaaatgcaagttataagaccaacata 51619818  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3898171 - 3898130
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaaca 42  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  3898171 taatactggcttgacctacaaatgcaagttataagaccaaca 3898130  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 16265724 - 16265767
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||  |||||||||| |||||||||||||||||||||||    
T  16265724 taatactgacttgacctacaaatgcaagttataagaccaacata 16265767  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26442265 - 26442308
Alignment:
Q  1 taatactgggttgacctacacatgcaagttataagaccaacata 44  Q
    ||||||||| |||||||||| || ||||||||||||||||||||    
T  26442265 taatactggcttgacctacaaatacaagttataagaccaacata 26442308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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