View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_3 (Length: 627)
Name: NF4064_low_3
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 45 - 612
Target Start/End: Original strand, 31284134 - 31284696
Alignment:
| Q |
45 |
ttatagaaatatacatatacacttaattgataaacacttatgttagaagcaagtaactaactaacttgtttatccaagcatgacccatatttatttcagt |
144 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
31284134 |
ttatagaaatatacatatatacttaattgacaaacacttatgttcgaagcaagtaactaact----tgtttatccaaacatgacccatatttatttcagt |
31284229 |
T |
|
| Q |
145 |
ttgcaaccttattgcttccttcattgtgtttttactcttttcagtgatcaatttaagatagattttaatatcaatttaggagcacacaatcctttnnnnn |
244 |
Q |
| |
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|| |||||| ||||| || | |||||| ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31284230 |
tttcaacctcattgcctcatccattgt-tttttaccctttttagcgatcaatttaagatagattttaatatcaatttaggagcatacaatcctttcaaaa |
31284328 |
T |
|
| Q |
245 |
nnnnn-gagcacacaataagaaatgttcggtgatgtttgttgggatcaatgtcttagagcagaatgatgcttatcaggggtagcttggattttttagatt |
343 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31284329 |
aaaaaagagcacacaataagaaatgttcagtgatgtttgttgggatcaatgtcttagagcagaatgatgcttatcaggggtagcttggattttttagatt |
31284428 |
T |
|
| Q |
344 |
tgattattttggattagtctcacatgcgctgtgctttggagttgcattgcatagccctgtttagatcccatgcaagtgaagtattgaaacttggaaatgt |
443 |
Q |
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| T |
31284429 |
tgattattttggattagtctcacatgcgctgtgctttggaggtgcattgcatagccctgtttagattccatgcaagtgaagtattgaaacttggaaatgt |
31284528 |
T |
|
| Q |
444 |
cataaaattgaaagaaactgaaaagagaatgcaaattcctcctcataatcttcaactccctaatatatcttcaatttttagatatcaatgatttagtagt |
543 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31284529 |
cataaaattgaaagaaactgaaaagagaatgcaaattcctcctcataatattcaactccct-atatatcttcaatttttagatatcaatgatttagtagt |
31284627 |
T |
|
| Q |
544 |
atctctatgtttaatggaaaatcatatgacgtagtttgttccacacttgtatccactttagactgtggt |
612 |
Q |
| |
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| T |
31284628 |
atctctatgtttaatggaaaatcatatgacgtagtttgttccacacttgtatccactttagactgtggt |
31284696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 44404692 - 44404657
Alignment:
| Q |
11 |
cataggcatttaattttagaatatagtaagtagatt |
46 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |
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|
| T |
44404692 |
cataggcatttaattttataatatagtaagtagatt |
44404657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 35039127 - 35039093
Alignment:
| Q |
11 |
cataggcatttaattttagaatatagtaagtagat |
45 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
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|
| T |
35039127 |
cataggcatttaattttataatatagtaagtagat |
35039093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 18310040 - 18310007
Alignment:
| Q |
12 |
ataggcatttaattttagaatatagtaagtagat |
45 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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|
| T |
18310040 |
ataggcatttaattttataatatagtaagtagat |
18310007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 20337203 - 20337169
Alignment:
| Q |
11 |
cataggcatttaattttagaatatagtaagtagat |
45 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |
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|
| T |
20337203 |
cataggcatttaattttataatatagtaagtagat |
20337169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 20745735 - 20745701
Alignment:
| Q |
11 |
cataggcatttaattttagaatatagtaagtagat |
45 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
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|
| T |
20745735 |
cataggcatttaattttataatatagtaagtagat |
20745701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 21351386 - 21351352
Alignment:
| Q |
11 |
cataggcatttaattttagaatatagtaagtagat |
45 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
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| T |
21351386 |
cataggcatttaattttataatatagtaagtagat |
21351352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 36518420 - 36518457
Alignment:
| Q |
11 |
cataggcatttaattttagaatatagtaagtagattat |
48 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36518420 |
cataggcatttaattttgtaatatagtaagtagattat |
36518457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 5250355 - 5250322
Alignment:
| Q |
11 |
cataggcatttaattttagaatatagtaagtaga |
44 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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|
| T |
5250355 |
cataggcatttaattttataatatagtaagtaga |
5250322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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