View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_5 (Length: 581)
Name: NF4064_low_5
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Complemental strand, 19574632 - 19574055
Alignment:
| Q |
1 |
atgactataagattcttttactgcagcaccttcaaatgcaaaaccattcttcttggagcacaatgcctgactatgtatttgtttccgcgatacagcacat |
100 |
Q |
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| T |
19574632 |
atgactataagattcttttactgcagcaccttcaaatgcaaaaccattcttcttggagcacaatgcctgactatgtatttgtttccgcgatacagcacat |
19574533 |
T |
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| Q |
101 |
aaatcatactgatgtttggcggaaacaagaattcgttgacgtgcaacttatcgaaatttcaagatatattgagatgattatgattaaaagtatgaaagta |
200 |
Q |
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| T |
19574532 |
aaatcatactgatgtttggcggaaacaagaattcgttgacgtgcaacttatcgaaatttcaagatatattgagatgattatgattaaaagtatgaaagta |
19574433 |
T |
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| Q |
201 |
tgtcaaaattattagtattttcttataatttttaagtagttatgttaagaagagagtgagtttatgtaatagtcattacttgaggagtggatcagatgct |
300 |
Q |
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| T |
19574432 |
tgtcaaaattattagtattgtcttgtaattttcaagtagttatgttaagaagagagtgagtttatgtaatagtcattacttgaggagtggatcagatgct |
19574333 |
T |
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| Q |
301 |
tgttatttcaaataatttagtcattaataatgtaagactttattctttcttattgtgagagatttgatttgtacgagactgtttactgtttttagcagta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19574332 |
tgttatttcaaataatttagtcattaataatgtaagactttattctttcttattgtgagagatttgatttgtacgagactgtttactgtttttagcagta |
19574233 |
T |
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| Q |
401 |
tgtaagtttatgcttttgtttgctatttcnnnnnnnntttcatgcttttgacagcaactattatcnnnnnnngatagaatcagtaactattatctattta |
500 |
Q |
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||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19574232 |
tgtaagtttatgcttttgtttgctatttcaaaaaaaagttcatgcatttgacagcaactattatctttttttgatagaatcagtaactattatctattta |
19574133 |
T |
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| Q |
501 |
tattnnnnnnnnnntcctattaattaaaagtatatgcaaaacaatatgacctattctctatgaagcacggacactcctcga |
581 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19574132 |
tattaaaaaaaa---cctattaattaaaagtatatgcaaaacaatatgacctattctctatgaagcatggacactcctcga |
19574055 |
T |
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