View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_7 (Length: 522)
Name: NF4064_low_7
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 505
Target Start/End: Original strand, 471077 - 471572
Alignment:
| Q |
11 |
gaagaagggtaagatttaagaacgaagttaaagtgagtgatnnnnnnnnnnnnnnnaagtgagtgagggggccttatttagggnnnnnnntgtaacagaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||| |
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| T |
471077 |
gaagaagggtaagatttaagaacgaagttaaagtgagtga----gtgagagagagaaagtgagtgaggggaccttatttagggaaaaaaatgtaacagaa |
471172 |
T |
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| Q |
111 |
gaccactcgtggggtctcgtaaaagtcctttgttactcgcttaaatgccctgcaaaattctaccacactcttttatctatatatctatctat-------- |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
471173 |
gaccactcgtggggtctcgtaaaagtcctttgttactcgcttaaatgccctgcaaaattctaccacactcttttatctatctatctatctatctatctat |
471272 |
T |
|
| Q |
203 |
--------atccatgtcatgtgtgtgtaaacggttcatagttgaaagtcaatagaggagcaatttagttcatatcattcattcatatactaaccataaag |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
471273 |
ctatctatatccatgtcatgtgtgtgtaaacggttcatagttgaaagtcaatagaggagcaatttagttcata---------------ctaaccataaag |
471357 |
T |
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| Q |
295 |
taggagtaataaaagtctcacatccaag----tggcccaacaaatatatttttcaaatctcgtccattacaaaattgcattagtctcgatctcctttttg |
390 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
471358 |
taggagtaataaaagtctcacatccaagcaagtggcccagcaaatatatttttcaaatctcgtccattacaaaattgcattagtctcgatctcctttttt |
471457 |
T |
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| Q |
391 |
atgtgagattcaaaatgatttgattcattcagtgttaattaagtgttgataattaattagtataatgattgggtagtgggtggatgggtgggtgagatgg |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
471458 |
atgtgagattcaaaatgatttgattcattcagtgttaattaagtgttgataattaattagtataatgattgggtagtgggtggatgggtgggtgagatgg |
471557 |
T |
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