View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4064_low_9 (Length: 477)
Name: NF4064_low_9
Description: NF4064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4064_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 4093244 - 4093695
Alignment:
| Q |
12 |
tcatcattgagttagttatgacatagaaggattggctttcatctaacaaggcttagtggaaatagttatacatttgtatcacatttgcaccccttttgca |
111 |
Q |
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| T |
4093244 |
tcatcattgagttagttatgacatagaaggattggttttcatctaacaaggcttagtggaaatagttatacatttgtatcacatttgcaccccttttgca |
4093343 |
T |
|
| Q |
112 |
ttttacaaatactattctgtttatgtcacattttttcttagatgaaatcagtttatcattcgcttctgctttgctttgtttctacaagttttcgtatcca |
211 |
Q |
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| T |
4093344 |
ttttacaaatactattctgtttatgtcatattttttcttagatgaaatcagtttatcattcgcttctgctttgctttgtttctacaagttttcgtatcca |
4093443 |
T |
|
| Q |
212 |
ctataagtttgattgaggtttaagatggtgttgcagcatccttaagttcatatgcttctatttgaactctatgacgcgaaatagccacatcaataattca |
311 |
Q |
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| T |
4093444 |
ctataagtttgattgaggtttaagatggtgttgcagcatccttaagttcttatgcttctatttgaactctatgacgcgaaatagccacatcaataattca |
4093543 |
T |
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| Q |
312 |
actggtttaggaacaactaaatgtaaggacgtctttcatcgattagatatgtgtaaggacaaataaaagtgacggcacttgtgtgtcattgtgaatttgt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4093544 |
actggtttaggaacaactaaatgtaaggacgtctttcttcgattagatatgtgtaaggacaaataaaagtgacggcacttgtgtgtcattgtgaatttgt |
4093643 |
T |
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| Q |
412 |
gacaatttttgttagttaattattattaatcaaaagtttataagaacttttt |
463 |
Q |
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| T |
4093644 |
gacaatttttgttagttaattattattaatcaaaagtttataagaacttttt |
4093695 |
T |
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