View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4065_high_12 (Length: 346)
Name: NF4065_high_12
Description: NF4065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4065_high_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 4482652 - 4482988
Alignment:
| Q |
9 |
agcagagaagacagtgtaaacaagaacaaatgtaccaataatctctgctccaagtccatcacctatggagtaacctttattgagagtattggcaccacca |
108 |
Q |
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| T |
4482652 |
agcagagaagacagtgtaaacaagaacaaatgtaccaacaatctctgctccaagtccatcacctatggagtaacctttattgagagtgttggcaccacca |
4482751 |
T |
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| Q |
109 |
ccaagtctttcatattggtgtggttggaagcccttaacaacagcagcaccgcaaatagcacccaaacattgcataattatgtagaacaatgtccttgtta |
208 |
Q |
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| T |
4482752 |
ccaagtctttcatattggtgtggttggaagcccttaacaacagcagcaccacaaatagcacccaaacattgcataattatgtagaacaatgtccttgtta |
4482851 |
T |
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| Q |
209 |
gagatagcttgcgtgccaagaaaagtccaaatgtcactgctgggttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaa |
308 |
Q |
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| T |
4482852 |
gagatagcttgcgtgccaagaaaagtccaaatgtcactgctgggttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaa |
4482951 |
T |
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| Q |
309 |
ggtttttattaaacacttagaaaagtgaagggtgatta |
346 |
Q |
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| T |
4482952 |
gg-ttttattaaacactttgaaaagtgaagcgtgatta |
4482988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 21793857 - 21793820
Alignment:
| Q |
10 |
gcagagaagacagtgtaaacaagaacaaatgtaccaat |
47 |
Q |
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| T |
21793857 |
gcagagaagacagtgtagacaagaacaaaggtaccaat |
21793820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 41037379 - 41037316
Alignment:
| Q |
9 |
agcagagaagacagtgtaaacaagaacaaatgtaccaataatctctgctccaagtccatcacct |
72 |
Q |
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| T |
41037379 |
agcagagaaaacagtgtagacaagaacaaaggtaccaacaatctcagctccaagtccatcacct |
41037316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 41037246 - 41037118
Alignment:
| Q |
139 |
cccttaacaacagcagcaccgcaaatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaa |
238 |
Q |
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| T |
41037246 |
cccttcaccacaccagcaccacaaatagcaccaagacattgcatcacaatgtagaatatagctcttgtaagtgacagctttcttgccaaaaaaagaccaa |
41037147 |
T |
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| Q |
239 |
atgtcactgctgggttaatgtgaccacct |
267 |
Q |
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| T |
41037146 |
atgtcacagcagggtttatgtgtccacct |
41037118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 35230298 - 35230424
Alignment:
| Q |
145 |
acaacagcagcaccgcaaatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtca |
244 |
Q |
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| T |
35230298 |
acaacaccagcaccacaaatagcacccaaacattgcatcaccatgtagaacaatgctcttgtcaatgacaatttccttgccaaaaatagcccaaatgtga |
35230397 |
T |
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| Q |
245 |
ctgctgggttaatgtgaccacctgcat |
271 |
Q |
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| T |
35230398 |
ctgctggatttatgtgaccacctgcat |
35230424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 2649448 - 2649509
Alignment:
| Q |
10 |
gcagagaagacagtgtaaacaagaacaaatgtaccaataatctctgctccaagtccatcacc |
71 |
Q |
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| T |
2649448 |
gcagagaagacagtgtagacaagaacaaaagtaccaacaatctcagctccaagaccatcacc |
2649509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 31459872 - 31459931
Alignment:
| Q |
13 |
gagaagacagtgtaaacaagaacaaatgtaccaataatctctgctccaagtccatcacct |
72 |
Q |
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| T |
31459872 |
gagaagacggtgtagacaagaacaaaggtaccaacaatctcagctccaagtccatcacct |
31459931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 42796343 - 42796311
Alignment:
| Q |
235 |
ccaaatgtcactgctgggttaatgtgaccacct |
267 |
Q |
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| T |
42796343 |
ccaaatgtcactgctgggttaatgtgaccacct |
42796311 |
T |
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