View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4065_high_21 (Length: 314)
Name: NF4065_high_21
Description: NF4065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4065_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 23128964 - 23128659
Alignment:
| Q |
1 |
aaactcgcagaagctgttaaaacgatgttaaaggaattcgaatcagctattcagaaagattcttcaaagaaacaagtctccggtggtggtgttcatcctc |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23128964 |
aaacttgcagaagctgttaaaacgatgttaaaggaattcgaatcagctattcagaaagattcttcaaagaaacaagtctccggtggtggtgttcatcctc |
23128865 |
T |
|
| Q |
101 |
tcacacgctatgtcatgaattacctaaccttcctcgccgattacggtggaattctcgctgatatcgtcttcgatatgccgcagtctccgttaccggagtc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23128864 |
tcacacgctatgtcatgaattacctaaccttcctcgccgattacggtggaattctcgctgatatcgtcttcgatatgccgcagtctccgttaccggagtc |
23128765 |
T |
|
| Q |
201 |
gtactatcgaagtcctatgcgcagcgagaattcatcgtcatcctcgtcatcatcatcttcgtcggagatatcagaaaaaatcgcgtggctgatacttgtt |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23128764 |
gtactatcgaagtccgatgcgcagcgagaattcatcgtcatcctcgtcatcatcatcttcatcggagatatcagaaaaaatcgcgtggctgatacttgtt |
23128665 |
T |
|
| Q |
301 |
catctc |
306 |
Q |
| |
|
| |||| |
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|
| T |
23128664 |
cttctc |
23128659 |
T |
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