View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4065_high_24 (Length: 305)
Name: NF4065_high_24
Description: NF4065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4065_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 300
Target Start/End: Complemental strand, 27548085 - 27547790
Alignment:
| Q |
5 |
aatccctattagattaatcattacaaaattcaattaactatgattatgaaacaagcgtcacaaaaccaatattaatctagcgaattcaatcaaacttaca |
104 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27548085 |
aatccctattagattaatcattacaaaatccaattaactatgattatgaaacaagcgtcacaaaaccaatattaatctagcgaattcaatcaaacttaca |
27547986 |
T |
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| Q |
105 |
acttattgttttaaatgctatcaatctatacaaaataaatcaaagcaagcgtttaattctacttcaaaaaatccaaaatcttatagtgaactaaagtgca |
204 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27547985 |
actaattgttttaaatgctatcaatctatacaaaataaatcaaagcaagcgtttaaatctacttcaaaaaatccaaaatcttatagtgaactaaagtgca |
27547886 |
T |
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| Q |
205 |
aaaatgagttatatatgattaagcatcaatacctaaaacgattttgcaaatgtaacactatatttataatcactttataggttaacctatgctact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
27547885 |
aaaatgagttatatatgattaagcatcaatacctaaaacgattttgcaaatgtaacactatatttataatcactttataggttaatctaggctact |
27547790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 23255540 - 23255459
Alignment:
| Q |
87 |
aattcaatcaaacttacaacttattgttttaaatgctatcaatctatacaaaataaatcaaagcaagcgtttaattctactt |
168 |
Q |
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| T |
23255540 |
aattcaatcaaacttacaaccaagtgttctaaatcctatcaacctatacagaataaatcaaagcaagcgtttaaatctactt |
23255459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 23255924 - 23255877
Alignment:
| Q |
5 |
aatccctattagattaatcattacaaaattcaattaactatgattatg |
52 |
Q |
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|||||||||| ||||||||||||| |||| |||||||||| ||||||| |
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| T |
23255924 |
aatccctattcgattaatcattacgaaatccaattaactaggattatg |
23255877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 23399285 - 23399342
Alignment:
| Q |
194 |
actaaagtgcaaaaatgagttatatatgattaagcatcaatacctaaaacgattttgc |
251 |
Q |
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||||||| |||||||||| || ||||||||||| |||||||||||||| || ||||| |
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| T |
23399285 |
actaaagagcaaaaatgaatttgatatgattaagtatcaatacctaaaatgaatttgc |
23399342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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