View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4065_high_3 (Length: 423)
Name: NF4065_high_3
Description: NF4065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4065_high_3 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 180 - 394
Target Start/End: Complemental strand, 8434676 - 8434454
Alignment:
| Q |
180 |
tcagtgcaacaatgattcgatgttgagttgataagcaactttcctccagctttgtttactactgacctatgggctat-ttttgtgtgtgttggggttgag |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
8434676 |
tcagtgcaacaatgattcgatgttgagttgataagcaactatcctccagctttgtttactactgacctatgggctattttttttgtgtgttggggttgag |
8434577 |
T |
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| Q |
279 |
aacttatacagggcgatcgatatacaaatttgaaatttttta-------aatttgtaatctgttgttctttataacttcttgtactcttaatttctggag |
371 |
Q |
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| T |
8434576 |
aacttatacagggcgatcgatatacaaatttgaaattttttaaatttgtaatttgtaatctgttgttctttataacttcttgtactcttaatttctggag |
8434477 |
T |
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| Q |
372 |
tctatgttaatgtggatcaattt |
394 |
Q |
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|||||||||| |||||||||||| |
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| T |
8434476 |
tctatgttaacgtggatcaattt |
8434454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 366
Target Start/End: Complemental strand, 8431631 - 8431525
Alignment:
| Q |
267 |
gttggggttgagaacttatacagggcgatcgatatacaaatttgaaattttttaaatttgtaa-------tctgttgttctttataacttcttgtactct |
359 |
Q |
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|||||||||||||||||||| || || || |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |
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| T |
8431631 |
gttggggttgagaacttataggcggtgactgacatacaaatttgaaattttttaaatttgtaatctgcattctgttgctctctataacttcttgtactcc |
8431532 |
T |
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| Q |
360 |
taatttc |
366 |
Q |
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| T |
8431531 |
taatttc |
8431525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 180 - 366
Target Start/End: Original strand, 75759 - 75953
Alignment:
| Q |
180 |
tcagtgcaacaatgattcgatgttgagttgataagcaactttcctccagctttgtttactactgacctatgggctatttttgtgtgtgttggggttgaga |
279 |
Q |
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|||||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||| || ||||||||| |||||||| |||| ||||||||||||| |
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| T |
75759 |
tcagtgtaacaatgattcgatgttgagttgataggcaactatcctctagctttgtttacgaccgacctatggtctatttttttgtgagttggggttgaga |
75858 |
T |
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| Q |
280 |
acttatacagggcgatcgatatacaaatttgaaatttttta-------aatttgtaatct-gttgttctttataacttcttgtactcttaatttc |
366 |
Q |
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| T |
75859 |
acttatacagggcgattgagatgcaaatttgaaattttttaaattcgtaatttgtaatctggttgttctttataacttcttgtactcttaatttc |
75953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 34856818 - 34856703
Alignment:
| Q |
9 |
gggattagcattccagttataaattatcctacaagtttctgattgggaatctggcacggtggagtattttttgattgtaatactgcattctatattgttc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34856818 |
gggattagcattccagttataaattatcctacaagtttctgattgggaatctggcacggtggagtatttattgattgtaatactgcattctatattgttc |
34856719 |
T |
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| Q |
109 |
atcattgtagccactg |
124 |
Q |
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| T |
34856718 |
atcattgtagccactg |
34856703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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