View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4065_high_4 (Length: 423)
Name: NF4065_high_4
Description: NF4065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4065_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 35202864 - 35202593
Alignment:
| Q |
14 |
agatggaactgtagttgttattatttgaaccaaacccatttctgtaatcatcatgatgattaagattaactaccccagatgaaaaacctaatccaagacc |
113 |
Q |
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| T |
35202864 |
agatggaactgtagttgttattatttgaaccaaacccatttctgtaatcatcatgatgattaagattaactaccccagatgaaaaacctaatccaagacc |
35202765 |
T |
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| Q |
114 |
attcacctgaggctgctgctgctgaagatgatcataaccagaagaagaacttgaaactcttgtagaattgaaccttgttgcaaaaggaaagttcatcaca |
213 |
Q |
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| T |
35202764 |
attcacctgaggctgctgctgctgaagatgatcataaccagaagaagaacttgaaactcttgtagaattgaaccttgttgcaaaaggaaagttcatcaca |
35202665 |
T |
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| Q |
214 |
tcatgacaagaagagttaccataaagaagagaattgatatggtttgaggtagaagcaatatcaaaactatgg |
285 |
Q |
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| T |
35202664 |
tcatgacaagaagagttaccataaagaagagaattgatatggtttgaggtagaagcaatatcaaaactatgg |
35202593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 312 - 395
Target Start/End: Complemental strand, 35202572 - 35202489
Alignment:
| Q |
312 |
agaaggagggtttgaattagcactagtaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaggagtgatt |
395 |
Q |
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| T |
35202572 |
agaaggagggtttgaattagcactattaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaagagtgatt |
35202489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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