View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4065_high_6 (Length: 373)
Name: NF4065_high_6
Description: NF4065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4065_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 37197185 - 37196824
Alignment:
| Q |
12 |
atgaacggtcatttaaagtaaaaggcccaatttcataaggactgtgggccatattcacctcaactcatgggtccagatatagtaaatgaccatagtccat |
111 |
Q |
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| T |
37197185 |
atgaacggtcatttaaagtaaaaggcccaatttcataaggactgtgggccatattcacctcaactcatgggtccagatatagtaaatgaccatagtccat |
37197086 |
T |
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| Q |
112 |
ttttaaaaagtcatcaatgtctgcatttgtctctaaattcagcacttaatttctagtattaattttctatattaaatttggagaagaaagaaataaagga |
211 |
Q |
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| T |
37197085 |
ttttaaaaagtcatcaatgtctgcatttgtctctaagttcagcacttaatttctagtattaattttctatattaaatttggagaagaaagaaataaagga |
37196986 |
T |
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| Q |
212 |
gaaaatataaaaaatgccattatgattatgaggattttctttttgtcaatattttgggtgggtaagttctgttagttgaaccataatcttatttattaag |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
37196985 |
gaaaatataaaaaatgccattatgattatgaggattttctttttgtcaatattttgggtgggttagttctgttagttggaccataatcttatttattaag |
37196886 |
T |
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| Q |
312 |
caaaaagtataagaatcatctagatgtttagactttttgtgtttgttgtctaatgtgaattt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37196885 |
caaaaagtataagaatcatctagatgtttagactttttgtgtttgttgtctaatgtgaattt |
37196824 |
T |
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