View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4065_low_2 (Length: 227)
Name: NF4065_low_2
Description: NF4065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4065_low_2 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 48935965 - 48936182
Alignment:
| Q |
1 |
tcatcagaatcaggatccgccttgtgttctttagatttgtgtgtcactatggaagagaagttcaggaacttgacacggcctgtttggatgaaatttttat |
100 |
Q |
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| T |
48935965 |
tcatcagaatcaggatccgccttgagttctttagatttgtgtgtcactatggaagagaagtccaggaacttgacacggcctgtttggatgaa-tttttat |
48936063 |
T |
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| Q |
101 |
taaactcattagattcaaaaataaatgaacaaataaagataaaccaaatcaacaaagtacatattgtatcctcatctatccttctatcacactctaaact |
200 |
Q |
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| T |
48936064 |
taaactcattagattcaaaaataaatgaacagataaagataaaccaaatcaacaaagtacatattgtatcctcatctatccttctatcacactctaaact |
48936163 |
T |
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| Q |
201 |
ctctaaaagagtccataat |
219 |
Q |
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| T |
48936164 |
ctctaaaagagtccataat |
48936182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 47108749 - 47108976
Alignment:
| Q |
3 |
atcagaatcaggatccgccttgtgttctt---tagatttgtgtgtcactatggaagagaagttcaggaacttgacacggcctgtttggatgaaattttta |
99 |
Q |
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| T |
47108749 |
atcagaatcaggatccgccttgagttcttctttagatttgtgtgtcactatggaagaaaagtccaggaacttgacacggcttgtttggatgaa-ttttta |
47108847 |
T |
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| Q |
100 |
ttaaactcattagattcaaaaataaatgaacaaataaagataaaccaaatcaacaaagtacatattgtatcctcatctatccttctatcacactctaaac |
199 |
Q |
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| T |
47108848 |
ttaaactcattagattcaaaaataaatgaacagataaagataaaccaaatcgacaaagtacatatcgtatcctcatctatccttctatcacactctaaac |
47108947 |
T |
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| Q |
200 |
tctct-aaaagagtccataatcaacataa |
227 |
Q |
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| T |
47108948 |
tctctaaaaaaaatccataatcaacataa |
47108976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 36969682 - 36969471
Alignment:
| Q |
15 |
atccgccttgtgttctttagatttgtgtgtcactatggaagagaagttcaggaacttgacacggcctgtttggatgaaatttttattaaactcattagat |
114 |
Q |
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| T |
36969682 |
atccgccttgagttctttaaatttgtgtgtaactattgaagaaaagtctaggaacttgacacggcctgtttggatgaa-tttttattaaactcattagat |
36969584 |
T |
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| Q |
115 |
tcaaaaataaatgaacaaataaagataaaccaaatcaacaaagtacatattgtatcctcatctatccttctatcacactctaaactctctaaaagagtcc |
214 |
Q |
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| T |
36969583 |
tcaaaaataaatgaacagataaagataaaccaaatcaacaaagtacatattgtatcctcatctatccttctatcacactctaaactctcttaaaaactcc |
36969484 |
T |
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| Q |
215 |
ataatcaacataa |
227 |
Q |
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| T |
36969483 |
ataatcaacataa |
36969471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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