View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_high_1 (Length: 681)
Name: NF4066_high_1
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 326 - 672
Target Start/End: Complemental strand, 35189607 - 35189262
Alignment:
| Q |
326 |
tatagcacgaccacacagttgtatggttagggtgaatttgatccgatttcaaggtctttttgtacaatgttaatttatttgcttcttgctatactcaatt |
425 |
Q |
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| T |
35189607 |
tatagcacgaccacacagttgtatggttagggtgaattcgatccgatttcaaggtctttttgtacaatgttaatttatttgcttcttgctatactcaatt |
35189508 |
T |
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| Q |
426 |
aaaacaaagctaaaaatgactcaaatggggcaagggctgtaaaatgactcctaaaggacactaaagacatgatatgacaaattgtcatcactaattgtga |
525 |
Q |
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| T |
35189507 |
aaaacaaacctaaaaatgactcaaatggggcaagggctgtaaaatgactcctaaaggacactaaagacatgatatgacaaactgtcatcactaattgtga |
35189408 |
T |
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| Q |
526 |
agacacaaatgcgtaaggcgtgcatgcgaacgtgcgaggcacatacacacgtgttattgttttattaattaagcaacattttttgaagtcaccataatta |
625 |
Q |
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| T |
35189407 |
agacacaaatgcgcaa-ccgtgcatgcgaacgtgcgaggcacatgcacacgtgttattgttttattaattaagcaacattttttgaagtcaccataatta |
35189309 |
T |
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| Q |
626 |
tttcgctcaataaaatcatatggactaatcatacctgagatctgtgc |
672 |
Q |
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| T |
35189308 |
ttttgctcaataaaatcatatggactaatcataccccagatctgtgc |
35189262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 74 - 329
Target Start/End: Complemental strand, 35189896 - 35189642
Alignment:
| Q |
74 |
ctaagaggtctcctttcgatcacaagttgacatgcctccgttcaatcttgtgcatcacaccactttcccctgccttgcaaaaattgcattttcaccccct |
173 |
Q |
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| T |
35189896 |
ctaagaggtctcctttcgatcacaagttgacatgcctccgttcaatcttgtgcatcacaccactttcccctaccttgcaaaaattgcattttcacccc-t |
35189798 |
T |
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| Q |
174 |
tttatgtcgaattggactttggtgtcttcttagaagttgtatatatggatgttagctttcatatgatattggtctcactcagttctaatacctacaactc |
273 |
Q |
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| T |
35189797 |
tttatgtcgaattggactttggtgtcttcttgaaagttgtatatatgaatgttagctttcatatgatattggtctcactcagttctaatacctacaactc |
35189698 |
T |
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| Q |
274 |
caaatataatttaataccatgcaaaggtttcatcacgcttcactcttttccctata |
329 |
Q |
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| T |
35189697 |
caaatatgatttaataccatgcaaaggtttcatcacgcttcactcttttccctata |
35189642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 344 - 490
Target Start/End: Complemental strand, 35187008 - 35186862
Alignment:
| Q |
344 |
ttgtatggttagggtgaatttgatccgatttcaaggtctttttgtacaatgttaatttatttgcttcttgctatactcaattaaaacaaagctaaaaatg |
443 |
Q |
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| T |
35187008 |
ttgtatggttagggtgaattcgatccggttttaaggtcttcttgtacaatgttagtttatttgcttcttgctatactcaattaaaacaaacataaaaata |
35186909 |
T |
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| Q |
444 |
actcaaatggggcaagggctgtaaaatgactcctaaaggacactaaa |
490 |
Q |
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| T |
35186908 |
actcaaatggggcaagggttgtaaaatgactcctaaaggacactaaa |
35186862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 35190833 - 35190793
Alignment:
| Q |
35 |
gattattactgaaaatttctcaaaccgcatccgtatatact |
75 |
Q |
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| T |
35190833 |
gattattactaaaaatttctcaaaccgcatctgtatatact |
35190793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 36541938 - 36541989
Alignment:
| Q |
184 |
attggactttggtgtcttcttagaagttgtatatatggatgttagctttcat |
235 |
Q |
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| T |
36541938 |
attggactttggtgtcttcataaaagttctagatatggatgttatctttcat |
36541989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 28842170 - 28842211
Alignment:
| Q |
194 |
ggtgtcttcttagaagttgtatatatggatgttagctttcat |
235 |
Q |
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| T |
28842170 |
ggtgtcttcctgaaagttgtatatatggatgttagctttcat |
28842211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 27868673 - 27868714
Alignment:
| Q |
191 |
tttggtgtcttcttagaagttgtatatatggatgttagcttt |
232 |
Q |
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| T |
27868673 |
tttggtgtcttcataaaagttgtatatatgaatgttagcttt |
27868714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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