View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_high_10 (Length: 272)
Name: NF4066_high_10
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_high_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 3273971 - 3273711
Alignment:
| Q |
12 |
atgaacaatatgcatgagtgataaagtgggaaaccctattcatttgagataccaatggagaaacaatgtacttctgcctgcaagattacagtgcaacgat |
111 |
Q |
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| T |
3273971 |
atgaacaatatgcatgagtgataaagtgggaaaccctattcatttgagataccgatggagaaacaatatacttctgcctgcaagattacagtgcaacgat |
3273872 |
T |
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| Q |
112 |
taatccaagaaactgtaatgacagtagaatatatatactattcccttcatttgtttttaattcttaacttaacaaaagaattaataagtgttattatcaa |
211 |
Q |
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| T |
3273871 |
taatccaagaaactgtaatgacagtagaatatatacactattcccttcatttgtttttaattcttaacttaacaaaagaattaataagtgttattatcaa |
3273772 |
T |
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| Q |
212 |
atttttaatgtaatattaataatttttaaatgtatctactaactaataatacataaaaact |
272 |
Q |
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| T |
3273771 |
atttttaatgtaatattaataatttttaaatgtatctactaactaataatacataaaaact |
3273711 |
T |
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