View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4066_high_2 (Length: 599)
Name: NF4066_high_2
Description: NF4066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4066_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 19 - 550
Target Start/End: Original strand, 41992536 - 41993071
Alignment:
| Q |
19 |
atcggtgcctctttactaagaccaacgtgggttgggaccattacttcaagttctataagaacccatcacaaaccacaattctaaaatcaagtctttcata |
118 |
Q |
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| T |
41992536 |
atcggtgcctctttactaagaccaacgtgggttgggaccattacttcaagttctataagaacccatcacaaaccacaattctaaaatcaagtctttcata |
41992635 |
T |
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| Q |
119 |
---aactcaactaccttttcatttcctaagagtttgaacattagttgactctaaaaaatgaagatgggtgctattggaggctctaaaagaaggctatcat |
215 |
Q |
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| T |
41992636 |
cacaactcaactaccttttcatttcctaagagtttgaacattagttgactctaaaaaatgaagatgggtgctattggaggctctaaaagaaggctatcat |
41992735 |
T |
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| Q |
216 |
catcatctagtagaggacttggaggagtccttaaggagcaaagggctaggctatacataataagaaggtgtgtggtcatgcttctatgttggcatgagta |
315 |
Q |
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| T |
41992736 |
catcatctagtagaggacttggaggagtccttaaggagcaaagggctaggctatacataataagaaggtgtgtggtcatgcttctatgttggcatgagta |
41992835 |
T |
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| Q |
316 |
attgaaagtacacatgtgtttggtaaacact-aaaatcgcggcgaaaaatcacagtggatcagaagctacacattggaacttctaaaattcgcattgaga |
414 |
Q |
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| T |
41992836 |
attgaaagtacacatgtgtttggtaaacactaaaaatcgcggcgaaaaatcacagtggatcagaagctacacattggaacttctaaaattcgcattgaga |
41992935 |
T |
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| Q |
415 |
gagctttgaactcgtggtagcagtgtccaccgttcaaccaaacacatgctaagtagttagttaagttgagatctttttaagacttagaagttccaagctt |
514 |
Q |
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| T |
41992936 |
gtgctttgaactcgtggtagcagtgtccaccgttcaaccaaacacatgctaagtagttagttaagttgagatctttttaagacttagaagttccaagctt |
41993035 |
T |
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| Q |
515 |
ggttccatgaaaatagaacaagattggttctttcta |
550 |
Q |
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| T |
41993036 |
ggttccatgaaaatagaacaagattggttctttcta |
41993071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 22021040 - 22020954
Alignment:
| Q |
229 |
aggacttggaggagtccttaaggagcaaagggctaggctatacataataagaaggtgtgtggtcatgcttctatgttggcatgagta |
315 |
Q |
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| T |
22021040 |
aggatttgggggagtacttagagagcaaagggcaaggctatacataattaggagatgtgtgatcatgctcctttgttggcatgagta |
22020954 |
T |
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